PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026429088.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family RAV
Protein Properties Length: 353aa    MW: 40483.5 Da    PI: 8.5505
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026429088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.11.2e-094990249
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                    ++kGV   + +grW A+I++      + r+++g+f ++ eAa a++ a
  XP_026429088.1 49 RFKGVVSQP-NGRWGAQIYVK-----KERIWIGTFKSKSEAATAYDSA 90
                    689**8888.8*********4.....6*******************88 PP
2B385.35.5e-27173272191
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---.......--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkke.....esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k+l psdv+k++rlv+pk+fae++       +   +      +++l++ d++ + W+++++y+++s++yv+t+GW++Fvk+ +L+++D+v+F+
  XP_026429088.1 173 FQKELAPSDVGKLNRLVIPKRFAEKYfpevskeE---KhpgviDDIQLSFFDREMKCWTFRYCYWRSSQSYVFTRGWNRFVKDRKLEAKDMVTFY 264
                     99**************************876541...1356667889************************************************ PP

                     E-SSSEE. CS
              B3  84 ldgrsefe 91 
                       +++++e
  XP_026429088.1 265 KCRKEQKE 272
                     54445554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MEEEMLSRVS DITTLHGVEE GCSDSNSSNR PRGSNKRHRQ DMSATPSARF KGVVSQPNGR  60
WGAQIYVKKE RIWIGTFKSK SEAATAYDSA TVHLRSQDSP RNYPLTPQTS LEPDFQNLFE  120
RHEILSMLRD GLYQTKFNEF VNSRSLNQGK QPDGLSLSLS TVGSANVWYQ QLFQKELAPS  180
DVGKLNRLVI PKRFAEKYFP EVSKEEKHPG VIDDIQLSFF DREMKCWTFR YCYWRSSQSY  240
VFTRGWNRFV KDRKLEAKDM VTFYKCRKEQ KEYYMIDVAL NGAESNGGFV GTHAAGNRED  300
LQLGFGQISI NESGPSDRPT STLMQNQEDM EVAPPQREED KKKVVMLFGV NIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-82RAV family protein