PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026429602.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 1107aa MW: 124006 Da PI: 6.6408

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026429602.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.6	4.2e-22	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_026429602.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDVAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 217 99***************************9445444.38**********************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ XP_026429602.1 218 SQLLLGIRRA 227 7789999997 PP
2	Auxin_resp	123.5	1.5e-40	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW+ S+Wr+L+ XP_026429602.1 252 AAHAAASNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKSSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1107 aa Download sequence
MKVHNNGISA NSGEGERKLI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKD 60 TDSIPGYPSL PSKLICVLHN VTLHADAETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSK 120 QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDVAWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAASNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDL DPVRWKSSQW RNLQVGWDES AAGERPSRVS IWDIEPVATP 360 FYICPPPFFR PKFSNHPDHE SDVENAFKSA MPWLGDDLGG IKDPQNPMFP GLSLVQWMSM 420 QQQNPQLSAS QFPSMIPSSL HNNNLTTDDP SKILNFQSHV SGGPSVHYNL PKTDQQTELL 480 QQSSLLWAQQ QQQRHQQLQN LGINPQQQQQ LHPQQQQLLQ QQQKQLQQQQ QQQQQQQQQQ 540 QQQQQHQQQQ QQQQQHQQQH QSQIQQKQLQ QQLQNEHHQQ QLLRSASISS GLSTPTQIID 600 QNLQKPLNYS QLQQQLPTSN PQSQQNFHNV NQNPVLLPSL PQDVQFQRQL EQQQSLLQRQ 660 QQQHNAHLQP LPMSQHELQL QLLQKLQQQQ QLLSQVSPRV QPQVSQQQQI HPQSQQLQQQ 720 LPPQQPQLGS VANFSQPLQN QHQHFSTNHL QGQQKPTAQI RAHSGLTDGD APSCSTSPST 780 NNCQVSGSSF LNRSHPGSGT LLEDMVAQPA NSSVQELQSK SDIRIKHELP SMKEPEHLGY 840 RGATTDPVEA SSTATSYCLD GGSLPTNFSM PNYCLDGDVQ VDTPNNLLFG VNIDGLTPEA 900 LMSRRFGSGK DLHNLISGYG GTTQRDVETE ISTAAISSQS FGVTDMSFKP VCSGDAPVND 960 NGVLNRGLWA NQTPQQRMRT FTKVQKRGSV GRSIDITRYK EYEELRYDLA RMFGIEGQLE 1020 ESQRSEWKLV YVDHENDILL VGDDPWEEFV SCVQSIKILS SAEVQQLSLD GDLGSVPAPT 1080 QTCSGSGSGN AWKGQYDEHS AAASFER

Sequence ? help Back to Top

Protein Sequence Length: 1107 aa Download sequence

MKVHNNGISA NSGEGERKLI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKD  60
TDSIPGYPSL PSKLICVLHN VTLHADAETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSK  120
QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDVAWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAASNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DPVRWKSSQW RNLQVGWDES AAGERPSRVS IWDIEPVATP  360
FYICPPPFFR PKFSNHPDHE SDVENAFKSA MPWLGDDLGG IKDPQNPMFP GLSLVQWMSM  420
QQQNPQLSAS QFPSMIPSSL HNNNLTTDDP SKILNFQSHV SGGPSVHYNL PKTDQQTELL  480
QQSSLLWAQQ QQQRHQQLQN LGINPQQQQQ LHPQQQQLLQ QQQKQLQQQQ QQQQQQQQQQ  540
QQQQQHQQQQ QQQQQHQQQH QSQIQQKQLQ QQLQNEHHQQ QLLRSASISS GLSTPTQIID  600
QNLQKPLNYS QLQQQLPTSN PQSQQNFHNV NQNPVLLPSL PQDVQFQRQL EQQQSLLQRQ  660
QQQHNAHLQP LPMSQHELQL QLLQKLQQQQ QLLSQVSPRV QPQVSQQQQI HPQSQQLQQQ  720
LPPQQPQLGS VANFSQPLQN QHQHFSTNHL QGQQKPTAQI RAHSGLTDGD APSCSTSPST  780
NNCQVSGSSF LNRSHPGSGT LLEDMVAQPA NSSVQELQSK SDIRIKHELP SMKEPEHLGY  840
RGATTDPVEA SSTATSYCLD GGSLPTNFSM PNYCLDGDVQ VDTPNNLLFG VNIDGLTPEA  900
LMSRRFGSGK DLHNLISGYG GTTQRDVETE ISTAAISSQS FGVTDMSFKP VCSGDAPVND  960
NGVLNRGLWA NQTPQQRMRT FTKVQKRGSV GRSIDITRYK EYEELRYDLA RMFGIEGQLE  1020
ESQRSEWKLV YVDHENDILL VGDDPWEEFV SCVQSIKILS SAEVQQLSLD GDLGSVPAPT  1080
QTCSGSGSGN AWKGQYDEHS AAASFER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein