PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026434316.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

HD-ZIP

Protein Properties

Length: 219aa MW: 25938.2 Da PI: 5.4586

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026434316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	5.1e-18	50	102	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq++ Le F +++++ +++ ++A +lgL+ rqV vWFqNrR ++k XP_026434316.1 50 KRKLTDEQVRLLELNFGSEHKLESDRKDRIALELGLDPRQVAVWFQNRRVRWK 102 4589************************************************9 PP
2	HD-ZIP_I/II	116.5	1.5e-37	49	140	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+l++eqv+lLE +F +e+kLe++rK ++a eLgl+prqvavWFqnrR R+ktk++E++y+ Lkra+d ++ e+++L++ev++L+e+l+e XP_026434316.1 49 RKRKLTDEQVRLLELNFGSEHKLESDRKDRIALELGLDPRQVAVWFQNRRVRWKTKKIEEEYSELKRAHDGVMVEKCHLQSEVSRLKEKLME 140 8***************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MEDDQMFLYS QQSDANSYNQ MVPTEGESKC RRRRKKNKVE KINEDIGFRK RKLTDEQVRL 60 LELNFGSEHK LESDRKDRIA LELGLDPRQV AVWFQNRRVR WKTKKIEEEY SELKRAHDGV 120 MVEKCHLQSE VSRLKEKLME AEKQIQQLKE RSIIDQTSNL SMGSPSSSCF TVDGGDPMFM 180 PDEFDNNFFY VPNGDNNYIH GMEWVNVNPF HDQDLYDIM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	52	RRRRKKNKVEKINEDIGFRKRK
2	32	53	RRRRKKNKVEKINEDIGFRKRK
3	33	54	RRRRKKNKVEKINEDIGFRKRK
4	34	55	RRRRKKNKVEKINEDIGFRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	2e-57	HD-ZIP family protein