PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026434568.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

M-type_MADS

Protein Properties

Length: 643aa MW: 73154 Da PI: 6.0444

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026434568.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.6	2.8e-22	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+ ++ q+tfskRrng++KK +ELS+LCd++va++ fs++g++ y+s XP_026434568.1 9 KKIEDATRSQITFSKRRNGLIKKIHELSTLCDVDVALVAFSPSGRVSQYPS 59 68***********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence
MGRHKVTIKK IEDATRSQIT FSKRRNGLIK KIHELSTLCD VDVALVAFSP SGRVSQYPSD 60 NKKFMKTLNR YVYLPILDRD YDVDDPKFHL NKLDHITDDG DKIIVVNREI KRYEQLKAVA 120 ELELHMNENK LRCFDKSLPK HATSLTKIRW QRKFLTDMLN QVRQRKEILI QGSLMNEDPP 180 IGYLVDVDQK NLYNHLFVDG SQPNGLLVNG SEANGMLHGS SFSNNGKSSM VLSPKKSTGL 240 RVNNYQVQRM DMPLGSKSSF LNNQCRSQVE LSQDSKLMVG SAPTVLFTGN SSTDNNYNDN 300 DGEQNQVFYN PIGMGMHADS FIQLYKDNKK KNKNVEKYQM NILNQELDNL VGMSLQGDSL 360 LQLEKDSKNN NTTNGGDNQM NMLHGEYYNP ICTCLHGKYF HNPTGTCLHV DAFRRTYMEN 420 NNNREKTPTI VRFMSSQVYC CNPMDTSSYV NPFLLCNNNK GKEKQMDMLS QEYARSNPRP 480 QAYATKELDI RGSQIQNYED VSNQDVILYN NQTSPENASD DLQHVDDDIG ISKGTTTTLM 540 NEASIPTFSD DFLLMDNELS FMQDLLNDSK ISQLEITYVN EEASTKSLSI DLHQIDDDLS 600 FLQETGNANR ASTTIPSSHS FPTDDDLSFL QVFVHVSHVF SAY

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence

MGRHKVTIKK IEDATRSQIT FSKRRNGLIK KIHELSTLCD VDVALVAFSP SGRVSQYPSD  60
NKKFMKTLNR YVYLPILDRD YDVDDPKFHL NKLDHITDDG DKIIVVNREI KRYEQLKAVA  120
ELELHMNENK LRCFDKSLPK HATSLTKIRW QRKFLTDMLN QVRQRKEILI QGSLMNEDPP  180
IGYLVDVDQK NLYNHLFVDG SQPNGLLVNG SEANGMLHGS SFSNNGKSSM VLSPKKSTGL  240
RVNNYQVQRM DMPLGSKSSF LNNQCRSQVE LSQDSKLMVG SAPTVLFTGN SSTDNNYNDN  300
DGEQNQVFYN PIGMGMHADS FIQLYKDNKK KNKNVEKYQM NILNQELDNL VGMSLQGDSL  360
LQLEKDSKNN NTTNGGDNQM NMLHGEYYNP ICTCLHGKYF HNPTGTCLHV DAFRRTYMEN  420
NNNREKTPTI VRFMSSQVYC CNPMDTSSYV NPFLLCNNNK GKEKQMDMLS QEYARSNPRP  480
QAYATKELDI RGSQIQNYED VSNQDVILYN NQTSPENASD DLQHVDDDIG ISKGTTTTLM  540
NEASIPTFSD DFLLMDNELS FMQDLLNDSK ISQLEITYVN EEASTKSLSI DLHQIDDDLS  600
FLQETGNANR ASTTIPSSHS FPTDDDLSFL QVFVHVSHVF SAY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	9e-25	MIKC_MADS family protein