PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026436009.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

LSD

Protein Properties

Length: 108aa MW: 11846.7 Da PI: 7.6823

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026436009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	33.2	8.3e-11	22	46	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Crtl YPrGAp+VRC +C t+ XP_026436009.1 22 CGTCRTLVFYPRGAPRVRCVSCKTI 46 **********************997 PP
2	zf-LSD1	42	1.5e-13	60	84	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C +lL+YP+GAp V+C++C+ + XP_026436009.1 60 CANCEVLLMYPYGAPKVKCSCCHSI 84 9*********************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence
MGTHGTEWQS VSPLPELGQM VCGTCRTLVF YPRGAPRVRC VSCKTINLVL EDHQIGNVNC 60 ANCEVLLMYP YGAPKVKCSC CHSITDVGEH NQRPRLSDQQ GPPPHAVI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-39	LSD family protein