PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026436098.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 359aa    MW: 40519 Da    PI: 7.5254
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026436098.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.32e-23953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    kr en+s rqvt+skRr+gilKKA ELS+LCd+++a+++fs+tgk
  XP_026436098.1  9 KRLENTSGRQVTYSKRRAGILKKARELSILCDIDIALLMFSPTGK 53
                    789****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MGRVKLKIKR LENTSGRQVT YSKRRAGILK KARELSILCD IDIALLMFSP TGKPTLCLGE  60
RSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGTS TQTVEELTNQ  120
SRLLQAQLSE MRNRLSCWRD PNKINNIEDL TIMENSVKES LARVRLHKDN FGKQPLMPLD  180
CDQFPNGMNL PLVMGGDQQA QPPIWLPNND GQQMMLRENP NLLAQRNIEC STDPSIHNYN  240
GYHLGTGKQP EMDSACQEGS TLHELNRNAC LSLQLGGQMP SFASYSLDLL NNKSFKDDGK  300
MSLQEPPMDY QVSSSSSFDP PRHRYDTNES GWASSSGHCA VPMFDGPLYH PHPHAQQPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-96M-type_MADS family protein