PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026437001.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MYB

Protein Properties

Length: 464aa MW: 52161.6 Da PI: 6.6717

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026437001.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl XP_026437001.1 14 KGLWSPEEDEKLLKHITKYGHGCWSSVPKPAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	43.2	9.4e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ l+++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_026437001.1 67 RGTFSQQEENLIIELHSVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MGRHSCCFKQ KLRKGLWSPE EDEKLLKHIT KYGHGCWSSV PKPAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQQEENLIIE LHSVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG 120 IDPNTHKPLS EVETGEVNTS VSNSRNNNTL SEEAFGGGPN ELNLLRAEIS KPDVVLTQAH 180 TLSVEDQFPF QASLSFKAHT NSTGNNLITC SGPTKEFFLE RFTNSHDNSK TPTTSAPSDS 240 IGYFPLQQLN DGLSDARDLV NQDPTSWFNQ NTRNFEMNSE FDSNSMPRMQ PPASSSILPS 300 LIDMRHAISL PSLRYPLAGG TNAFHSWKAG NHKHDSSNSD VTTNSNTELQ SNCSFVENGT 360 FSWGLEDGKE NQNTSVEGET DDSKWSDYLL YTPLLTSGTV QNPAPQSLFS DIKSESQFTI 420 EGSCTSWHQN HHLQQQQQQQ QQQLQAQDLY TKDFQKLATA FGQF

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MGRHSCCFKQ KLRKGLWSPE EDEKLLKHIT KYGHGCWSSV PKPAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEENLIIE LHSVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPNTHKPLS EVETGEVNTS VSNSRNNNTL SEEAFGGGPN ELNLLRAEIS KPDVVLTQAH  180
TLSVEDQFPF QASLSFKAHT NSTGNNLITC SGPTKEFFLE RFTNSHDNSK TPTTSAPSDS  240
IGYFPLQQLN DGLSDARDLV NQDPTSWFNQ NTRNFEMNSE FDSNSMPRMQ PPASSSILPS  300
LIDMRHAISL PSLRYPLAGG TNAFHSWKAG NHKHDSSNSD VTTNSNTELQ SNCSFVENGT  360
FSWGLEDGKE NQNTSVEGET DDSKWSDYLL YTPLLTSGTV QNPAPQSLFS DIKSESQFTI  420
EGSCTSWHQN HHLQQQQQQQ QQQLQAQDLY TKDFQKLATA FGQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	6e-89	MYB family protein