PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026438267.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 251aa    MW: 28151.4 Da    PI: 9.8463
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026438267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.18.4e-272472149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k ie ksnrqvtfskRrng++KKA+EL+vLC+aevavi+fs+ gk y +
  XP_026438267.1 24 KMIEIKSNRQVTFSKRRNGLFKKASELCVLCGAEVAVIVFSPAGKAYSF 72
                    67999****************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MVAMAVKNKK ERKPSQGRKK IPIKMIEIKS NRQVTFSKRR NGLFKKASEL CVLCGAEVAV  60
IVFSPAGKAY SFGNPQVDST IKRFLTSHDN NNNNNHQLAI RPNNVHRHGF SAHEQQQLQT  120
QQQYIKVSNQ LDLEKKRGVL VEKLKKLNST NDGSDKFWWE IPIDGLSLNE LEQMKSAMEE  180
LKKTVAKRIE ELVINGAATS SSPVMMPTPF LNPNPICCMN SYAPGENLPE AKCSITATTT  240
TAIVPYDDYN C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-39M-type_MADS family protein