PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026440603.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family RAV
Protein Properties Length: 353aa    MW: 40635.4 Da    PI: 6.9532
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026440603.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.54.3e-104990249
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                    ++kGV   + +grW A+I++      + r+++g+f ++ eAa a++ a
  XP_026440603.1 49 RFKGVVSQP-NGRWGAQIYVK-----KERIWIGTFKSESEAAMAYDSA 90
                    689**8888.8*********4.....6**********88*******88 PP
2B387.61.1e-27172271191
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---.......--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkke.....esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k+ltpsdv+k++rlv+pk+fae++       +   +      +++l++ d++ + W+++++y+++s++yv+t+GW++Fvk+ +L+++D+v+F+
  XP_026440603.1 172 FQKELTPSDVGKLNRLVIPKRFAEKYfpevskeE---KhpgviDDIQLSFFDREMKCWKFRYCYWRSSQSYVFTRGWNRFVKDRKLEAKDMVTFY 263
                     99**************************876541...1356667889************************************************ PP

                     E-SSSEE. CS
              B3  84 ldgrsefe 91 
                       +++++e
  XP_026440603.1 264 KCRKEQKE 271
                     54445554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MEEEMLSRVS DNTTLHGVEE GCLDSNSSNS PRGSNKRHRQ DMSATPSARF KGVVSQPNGR  60
WGAQIYVKKE RIWIGTFKSE SEAAMAYDSA TVHLRSQDSP RNYPLTPQTS LEPDFQNLFE  120
RHEILSMLRD GLYQTKFNEF VNSRSLNHDK QHDGLSLSLS TNDAAVTYQQ LFQKELTPSD  180
VGKLNRLVIP KRFAEKYFPE VSKEEKHPGV IDDIQLSFFD REMKCWKFRY CYWRSSQSYV  240
FTRGWNRFVK DRKLEAKDMV TFYKCRKEQK EYYMIDVALN GAEINGGSVG THATGNREDL  300
QLGFGQISIN ESGPSDRTSS TRMQNLEDME VAPPQRDEEE EKKAVRLFGV NIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.13e-83RAV family protein