PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026442085.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26892.5 Da    PI: 5.6674
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026442085.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.98.1e-112421150
                    HHHHHHHHHHHHHHHHHHHH.HT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 11 vtfskRrngilKKAeELSvL.Cdaevaviifsstgklyeys 50
                    v fskRr gi  KA  L+ L  d+ v++i+fs+ gk +++ 
  XP_026442085.1  2 VAFSKRRGGIQRKATKLCKLfADIIVCIIVFSPAGKAFTFT 42
                    89****************8868*****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MVAFSKRRGG IQRKATKLCK LFADIIVCII VFSPAGKAFT FTNSPMGVCY MVQRFLGEQR  60
KDNKQENKNV HSHKGKNSTY DHQCRDKAGV GSDNDSFWWE NIDMEELDSV EKLKDVRESL  120
EKLKQNLSAR KEKVITSSTS PSSSPSSTIE DSIVVEDSDD EDCKIVEVAE ISITEKHEAR  180
KTIGEDHSDL DLSLGWQLKE TMSLLEKVEE QLPFLKRDIG HHMVEQCQID PLTKLTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.12e-08M-type_MADS family protein