PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026443070.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 194aa MW: 22468.6 Da PI: 9.5599

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026443070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.5	1e-29	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ien++nrqvt++kRr gi+KKA+ELS LCda+v+v++fs++gkl+ey XP_026443070.1 9 KYIENTTNRQVTYCKRRSGIMKKAHELSYLCDAQVCVVMFSERGKLHEYV 58 57***********************************************7 PP
2	K-box	20	2.8e-08	93	149	15	70
K-box 15 eslqqelakLkkeienLqreqRhllG.edLesLslkeLqqLeqqLekslkkiRskKn 70 ++l++el+k k+ +++L++e+ ++ G edL++ s+ +L L+ +L +sl+ +R +K XP_026443070.1 93 KTLENELRKQKEINSTLRKEIGQRTGqEDLSEFSYGQLLVLKGDLRHSLEIVRHHKI 149 6789********************779**********************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MVSGKRVMKY IENTTNRQVT YCKRRSGIMK KAHELSYLCD AQVCVVMFSE RGKLHEYVSP 60 STTMKELFDR YEKNTDIDLS PSEYEAGNVN LLKTLENELR KQKEINSTLR KEIGQRTGQE 120 DLSEFSYGQL LVLKGDLRHS LEIVRHHKIR SEEAHRGLRV RFLQGSHLNP LNAVPSQVTF 180 QLQPSQHNLH DAAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-37	MIKC_MADS family protein