PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026443088.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family MIKC_MADS
Protein Properties Length: 270aa    MW: 31248 Da    PI: 6.3847
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026443088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.25.7e-25958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k ien+  rq ++skRr gi KKA EL vLCda+v+v++fsstgkl+ey 
  XP_026443088.1  9 KYIENSAYRQASYSKRRSGITKKATELTVLCDAQVCVVMFSSTGKLHEYV 58
                    579**********************************************7 PP
2K-box54.16.7e-1971168197
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                     yq+ + ++l++a++e lq+el+  ++  + L++e+ ++ G+ dL++Ls++eL+ Le++L++slk iR++K+++l++ ++   +k ++l+e+ k+L
  XP_026443088.1  71 YQRETRVDLWAAEQEALQEELRAQQEIGRRLKKEISQRTGQdDLSELSIEELRGLEENLDESLKIIRKRKDHVLTSRTNIFTRKIRNLEEARKRL 165
                     67788889********************************637**************************************************99 PP

           K-box  95 rkk 97 
                      + 
  XP_026443088.1 166 LRS 168
                     876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MGRAKIEIKY IENSAYRQAS YSKRRSGITK KATELTVLCD AQVCVVMFSS TGKLHEYVSP  60
STTLKEFFDR YQRETRVDLW AAEQEALQEE LRAQQEIGRR LKKEISQRTG QDDLSELSIE  120
ELRGLEENLD ESLKIIRKRK DHVLTSRTNI FTRKIRNLEE ARKRLLRSVY AKKEEPYYPV  180
PADNEGDHYP EYVQKQEQEF FSVVPANNER DQQSKYGSAS LSVGRDFIND RAGDFESSEI  240
AFHQLQPSHT NLNDEAGGVC QSSYMSMILL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.14e-46MIKC_MADS family protein