PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026443089.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 215aa MW: 24847.3 Da PI: 10.1245

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026443089.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.3	2.6e-25	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien nrq+t+skR+ gilKKA EL +LC+a+v++i+fs++gk+ ey+s XP_026443089.1 9 KFIENPFNRQITYSKRKSGILKKARELTILCNAQVCLIMFSKSGKIAEYIS 59 79***********************************************86 PP
2	K-box	57.8	4.8e-20	71	167	1	96
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllG.edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 yq++++++l+ea++e lq+el+ ++ + L++e+R++ G ++L++Ls++eL+ Le++L++sl +R++Kn++l++q++++ k + + + L XP_026443089.1 71 YQRKTNTDLWEAQYEALQKELRAQQEIGSRLKKEIRQRTGgDGLSELSFEELRVLEEDLHHSLGIVRNRKNHVLTSQTRTTMKSIRIEETRRSIL 165 78899999***************************985378*********************************99977766666666666 PP K-box 95 rk 96 ++ XP_026443089.1 166 QR 167 55 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MGRGKIEIKF IENPFNRQIT YSKRKSGILK KARELTILCN AQVCLIMFSK SGKIAEYISP 60 STTLKDFLDR YQRKTNTDLW EAQYEALQKE LRAQQEIGSR LKKEIRQRTG GDGLSELSFE 120 ELRVLEEDLH HSLGIVRNRK NHVLTSQTRT TMKSIRIEET RRSILQRSLC AEREKQESHL 180 IAVPAGNDGD DQPHFTTLQM FTNWFSTATK PSQSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	4e-47	MIKC_MADS family protein