PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026443090.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 240aa MW: 27667 Da PI: 8.0895

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026443090.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.5	9.8e-25	11	60	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ien++nr+vt+skR++gilKKA EL +LC+a+v++i+fs++gk ey XP_026443090.1 11 KYIENSTNRKVTYSKRKKGILKKARELNILCNAQVCLIMFSKSGKNTEYV 60 57*******************************************99996 PP
2	K-box	41.7	5e-15	73	144	1	71
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKne 71 yq+ +++sl+ea++e lq+el+ ++ + L++e+R++ G+ dL++ s++eL + e++Le+sl+ +R++K + XP_026443090.1 73 YQRETNTSLWEAQYEALQEELRAQQEIGRRLKKEIRQRTGQdDLSEFSIEELGRFEKNLEESLEIVRDRKAK 144 78889999******************************637*************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MGRRSGKLVI KYIENSTNRK VTYSKRKKGI LKKARELNIL CNAQVCLIMF SKSGKNTEYV 60 SPSTTMKDFL DRYQRETNTS LWEAQYEALQ EELRAQQEIG RRLKKEIRQR TGQDDLSEFS 120 IEELGRFEKN LEESLEIVRD RKAKKVESCY PVPADNEGYH YLDFAQKQEQ EFFYAVPSNN 180 EGGQQADYGS ASSSIRRLLT DGVCCDCQSS EITFQHLPQP SYTNLHKEAG GAYSYNQTFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	8e-33	MIKC_MADS family protein