PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026445688.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 245aa    MW: 28030.2 Da    PI: 4.481
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026445688.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.68e-192067249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +i++ks+ qvtfskRr+g++KK  ELSvL++ ++a+i fs+ g+ + +
  XP_026445688.1 20 KIKDKSRLQVTFSKRRKGLFKKETELSVLTGSQIALIGFSPAGRSHVF 67
                    59****************************************987655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MEMKKQRPGG VGRKNIKIGK IKDKSRLQVT FSKRRKGLFK KETELSVLTG SQIALIGFSP  60
AGRSHVFGNL DLILDRFLNN INGEIQKDDE QQQRRCLEVE RELEAENKRG VLLESLVNCD  120
LGPDNYKFWW NTYVDGLSLD ELVQMRSDME QLQKCVAQRS HDLQMTSNNT ASSSSSSTSS  180
YEDKSLALMT IPSGNEIVDD DYQNEEMVNE FLFGFDFQEH EFGFGNTTPT DEEEITADMF  240
SDDYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-22M-type_MADS family protein