PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026445690.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 243aa    MW: 27697.9 Da    PI: 4.6006
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026445690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.36.1e-211967149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    ++i++ks+ qvtfskRr+g++KKA ELSvL++ ++a+i fs+ g+ y +
  XP_026445690.1 19 EKIKDKSRLQVTFSKRRKGLFKKATELSVLTGSQIALIGFSPAGRPYVF 67
                    579****************************************987765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MEMKKQRPGG GGRKKIKIEK IKDKSRLQVT FSKRRKGLFK KATELSVLTG SQIALIGFSP  60
AGRPYVFGNP DLILDRFLNN INGEAREIQK DDDDDQQQRR CLEVERELEA EKKRGVFLDS  120
LINYDLGAGN DKSWWETGMN GLSLDELIQM RSHMEKLQKC VSERSHDLQM TGNIASSSSS  180
SYEDKSLALM TIPSGNEIVD DDYQNEEMVN ELLFDSQEYE FGFGNTTSTD QEITADMFSD  240
DYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-23M-type_MADS family protein