PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026448129.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 444aa MW: 48694 Da PI: 7.8819

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026448129.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	43	68	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ rtG C yG++C+F+H+ XP_026448129.1 43 PGEPDCIYYIRTGLCGYGNNCRFNHP 68 5789*********************8 PP
2	zf-CCCH	36.1	1.1e-11	88	111	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++f++tGtC++G +Ck++H++ XP_026448129.1 88 PDCQYFLKTGTCRFGVTCKYNHPR 111 79********************96 PP
3	zf-CCCH	34.2	4.1e-11	132	156	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG CkyG CkF+H++ XP_026448129.1 132 EKPCPHYMRTGVCKYGFACKFNHPQ 156 689********************97 PP
4	zf-CCCH	39.3	1.1e-12	282	307	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++Ck++H++ XP_026448129.1 282 DQPECQYYMKTGTCKFGPTCKYHHPR 307 689*********************96 PP
5	zf-CCCH	31.9	2.3e-10	327	352	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C f++ +G+Ck+G +Ck+ H+ XP_026448129.1 327 PGQAICTFYSLYGICKFGLSCKYDHP 352 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MPDSWKVKIN ASPDNLQEAM WRLKIQAQNG VVVANSNLYP DRPGEPDCIY YIRTGLCGYG 60 NNCRFNHPSY PGQVAQYRGE LPERDGLPDC QYFLKTGTCR FGVTCKYNHP RDKDDARKIQ 120 LNMLGLPIRQ EEKPCPHYMR TGVCKYGFAC KFNHPQPAAV GSLPPVTGNA SFGSTGSSVA 180 PPLSGLPYVG GIPAWTLPTT PYLSGHPMQG PQAYMPVVLS SSQGIITAPQ GWTYSETANP 240 VSSTNVLGSN FIYTSKHQGE LGINGQVHML QTPAPQFPER PDQPECQYYM KTGTCKFGPT 300 CKYHHPRERT APLATSTLSP YGLPLRPGQA ICTFYSLYGI CKFGLSCKYD HPLTGLYNYN 360 LGMPALSIPD PTFSYNRIST LAGSEEKSPS KSSISLSDQN EETDTTSIKH QCMDAKTSEE 420 PKQQAVSSVN TSTTSLQLPL DASE

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MPDSWKVKIN ASPDNLQEAM WRLKIQAQNG VVVANSNLYP DRPGEPDCIY YIRTGLCGYG  60
NNCRFNHPSY PGQVAQYRGE LPERDGLPDC QYFLKTGTCR FGVTCKYNHP RDKDDARKIQ  120
LNMLGLPIRQ EEKPCPHYMR TGVCKYGFAC KFNHPQPAAV GSLPPVTGNA SFGSTGSSVA  180
PPLSGLPYVG GIPAWTLPTT PYLSGHPMQG PQAYMPVVLS SSQGIITAPQ GWTYSETANP  240
VSSTNVLGSN FIYTSKHQGE LGINGQVHML QTPAPQFPER PDQPECQYYM KTGTCKFGPT  300
CKYHHPRERT APLATSTLSP YGLPLRPGQA ICTFYSLYGI CKFGLSCKYD HPLTGLYNYN  360
LGMPALSIPD PTFSYNRIST LAGSEEKSPS KSSISLSDQN EETDTTSIKH QCMDAKTSEE  420
PKQQAVSSVN TSTTSLQLPL DASE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-93	C3H family protein