PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026448130.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 443aa MW: 48564.9 Da PI: 8.0077

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026448130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	42	67	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ rtG C yG++C+F+H+ XP_026448130.1 42 PGEPDCIYYIRTGLCGYGNNCRFNHP 67 5789*********************8 PP
2	zf-CCCH	36.1	1.1e-11	87	110	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++f++tGtC++G +Ck++H++ XP_026448130.1 87 PDCQYFLKTGTCRFGVTCKYNHPR 110 79********************96 PP
3	zf-CCCH	34.3	4.1e-11	131	155	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG CkyG CkF+H++ XP_026448130.1 131 EKPCPHYMRTGVCKYGFACKFNHPQ 155 689********************97 PP
4	zf-CCCH	39.3	1.1e-12	281	306	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++Ck++H++ XP_026448130.1 281 DQPECQYYMKTGTCKFGPTCKYHHPR 306 689*********************96 PP
5	zf-CCCH	31.9	2.3e-10	326	351	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C f++ +G+Ck+G +Ck+ H+ XP_026448130.1 326 PGQAICTFYSLYGICKFGLSCKYDHP 351 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MPDSWKVKIN ASPDNLQAMW RLKIQAQNGV VVANSNLYPD RPGEPDCIYY IRTGLCGYGN 60 NCRFNHPSYP GQVAQYRGEL PERDGLPDCQ YFLKTGTCRF GVTCKYNHPR DKDDARKIQL 120 NMLGLPIRQE EKPCPHYMRT GVCKYGFACK FNHPQPAAVG SLPPVTGNAS FGSTGSSVAP 180 PLSGLPYVGG IPAWTLPTTP YLSGHPMQGP QAYMPVVLSS SQGIITAPQG WTYSETANPV 240 SSTNVLGSNF IYTSKHQGEL GINGQVHMLQ TPAPQFPERP DQPECQYYMK TGTCKFGPTC 300 KYHHPRERTA PLATSTLSPY GLPLRPGQAI CTFYSLYGIC KFGLSCKYDH PLTGLYNYNL 360 GMPALSIPDP TFSYNRISTL AGSEEKSPSK SSISLSDQNE ETDTTSIKHQ CMDAKTSEEP 420 KQQAVSSVNT STTSLQLPLD ASE

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MPDSWKVKIN ASPDNLQAMW RLKIQAQNGV VVANSNLYPD RPGEPDCIYY IRTGLCGYGN  60
NCRFNHPSYP GQVAQYRGEL PERDGLPDCQ YFLKTGTCRF GVTCKYNHPR DKDDARKIQL  120
NMLGLPIRQE EKPCPHYMRT GVCKYGFACK FNHPQPAAVG SLPPVTGNAS FGSTGSSVAP  180
PLSGLPYVGG IPAWTLPTTP YLSGHPMQGP QAYMPVVLSS SQGIITAPQG WTYSETANPV  240
SSTNVLGSNF IYTSKHQGEL GINGQVHMLQ TPAPQFPERP DQPECQYYMK TGTCKFGPTC  300
KYHHPRERTA PLATSTLSPY GLPLRPGQAI CTFYSLYGIC KFGLSCKYDH PLTGLYNYNL  360
GMPALSIPDP TFSYNRISTL AGSEEKSPSK SSISLSDQNE ETDTTSIKHQ CMDAKTSEEP  420
KQQAVSSVNT STTSLQLPLD ASE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-92	C3H family protein