PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026449356.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

CO-like

Protein Properties

Length: 382aa MW: 42930.8 Da PI: 6.0801

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026449356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.4	2.5e-07	23	57	2	36
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg 36 ++r C+ ++e ++ l+C+ ++ lC +C e H+ XP_026449356.1 23 KKRLCDFCGESKALLYCKADSAKLCFQCDGEVHST 57 6789****99***************999954 PP
2	zf-B_box	23	1.6e-07	68	104	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgHtvv 40 + C+ +++++++++C + ++ lC++C e+H++H+++ XP_026449356.1 68 QLCDICDSNPASIHCSTENHALCQNCDWETHNSHNHD 104 57*****************************999875 PP
3	CCT	61.7	2.4e-21	339	381	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ ++RYkeKrktR+++K+irYesRKa+AesR R+KGrF+k XP_026449356.1 339 RDLMISRYKEKRKTRRYDKHIRYESRKARAESRTRIKGRFAKI 381 566799***********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MTSKDSGRNN EVKLENIKTH EEKKRLCDFC GESKALLYCK ADSAKLCFQC DGEVHSTNPL 60 FTKHIRFQLC DICDSNPASI HCSTENHALC QNCDWETHNS HNHDKNLIHD RRPLEGFTGC 120 PSATELSSIL GFEDLRDKSF FDGGGGGSFN NLGSGFDDLF VWDTPNIISL DDLIVSSDSS 180 QNFPAMGIPP LPKNRNTACG KYKEDIIHQL QNMLNLDINW KNECVEVESL LGLKPLLPEQ 240 PGNLCSSFKH DAEPNGYEAH AIHWQDDGGE AGNQNLMPST FSGSYYEDSF LALDNPDDVG 300 GFGIDVTGGN EKQSQHQVVE DTVHVVPKYT PPQLTGQNRD LMISRYKEKR KTRRYDKHIR 360 YESRKARAES RTRIKGRFAK IA

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MTSKDSGRNN EVKLENIKTH EEKKRLCDFC GESKALLYCK ADSAKLCFQC DGEVHSTNPL  60
FTKHIRFQLC DICDSNPASI HCSTENHALC QNCDWETHNS HNHDKNLIHD RRPLEGFTGC  120
PSATELSSIL GFEDLRDKSF FDGGGGGSFN NLGSGFDDLF VWDTPNIISL DDLIVSSDSS  180
QNFPAMGIPP LPKNRNTACG KYKEDIIHQL QNMLNLDINW KNECVEVESL LGLKPLLPEQ  240
PGNLCSSFKH DAEPNGYEAH AIHWQDDGGE AGNQNLMPST FSGSYYEDSF LALDNPDDVG  300
GFGIDVTGGN EKQSQHQVVE DTVHVVPKYT PPQLTGQNRD LMISRYKEKR KTRRYDKHIR  360
YESRKARAES RTRIKGRFAK IA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	8e-71	CO-like family protein