PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026449419.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 475aa MW: 51819 Da PI: 8.3143

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026449419.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.9	1.3e-11	54	78	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG C yGdrC+++H++ XP_026449419.1 54 EPNCVYYMRTGSCGYGDRCRYNHPR 78 689********************96 PP
2	zf-CCCH	35.8	1.4e-11	99	124	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f+++tGtCk+G Ck++H++ XP_026449419.1 99 GQPVCEFYMKTGTCKFGVYCKYHHPR 124 6799********************96 PP
3	zf-CCCH	37.8	3.3e-12	145	169	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C+++++tG+Ck+G CkF+H+ XP_026449419.1 145 GETECSYYMKTGQCKFGLACKFHHP 169 7789********************8 PP
4	zf-CCCH	38.5	1.9e-12	303	329	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G +Ck++H+p XP_026449419.1 303 PGEPECQYYMRTGDCKFGTSCKYHHPP 329 5799*********************97 PP
5	zf-CCCH	37.3	4.7e-12	351	375	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C f+++ G+Ck+G++CkF H++ XP_026449419.1 351 SPPCTFYMQHGICKFGPTCKFDHPM 375 589********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MERFGKNQLI MESDPQFGWN SSSIQLSQTS SLDVAMLQLR LGNQESSYPE RPAEPNCVYY 60 MRTGSCGYGD RCRYNHPRDR SSLVVGAVRQ GGEYPQREGQ PVCEFYMKTG TCKFGVYCKY 120 HHPRTGAGTM IPAALNYYGY PIRPGETECS YYMKTGQCKF GLACKFHHPN PAGVSMLAPA 180 PALAPAPTFY PMVQSPSVPS QPYGGVPTSW EVPRPTLLSG SYVQGAYAPM LLPPAMVPVS 240 GWSPYRAPLS PVASQPTVRA GPLYGVAQLP SSATEYVGPY RPLPSLAVSL SSSMKERMFP 300 ERPGEPECQY YMRTGDCKFG TSCKYHHPPD WTAPETNSVL STMGLPLRPE SPPCTFYMQH 360 GICKFGPTCK FDHPMEMLSY RSSAPALVDM PVSPYPVCSS LATPAPSSSS SEFQPEFITG 420 SHISYSTRLP SSINSTGLVG SMFSKSGPVL PHLFFGQSPP VPSRVNIGGD VRSSN

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MERFGKNQLI MESDPQFGWN SSSIQLSQTS SLDVAMLQLR LGNQESSYPE RPAEPNCVYY  60
MRTGSCGYGD RCRYNHPRDR SSLVVGAVRQ GGEYPQREGQ PVCEFYMKTG TCKFGVYCKY  120
HHPRTGAGTM IPAALNYYGY PIRPGETECS YYMKTGQCKF GLACKFHHPN PAGVSMLAPA  180
PALAPAPTFY PMVQSPSVPS QPYGGVPTSW EVPRPTLLSG SYVQGAYAPM LLPPAMVPVS  240
GWSPYRAPLS PVASQPTVRA GPLYGVAQLP SSATEYVGPY RPLPSLAVSL SSSMKERMFP  300
ERPGEPECQY YMRTGDCKFG TSCKYHHPPD WTAPETNSVL STMGLPLRPE SPPCTFYMQH  360
GICKFGPTCK FDHPMEMLSY RSSAPALVDM PVSPYPVCSS LATPAPSSSS SEFQPEFITG  420
SHISYSTRLP SSINSTGLVG SMFSKSGPVL PHLFFGQSPP VPSRVNIGGD VRSSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-134	C3H family protein