PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026450261.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 246aa MW: 28733.5 Da PI: 8.4848

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026450261.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.9	4.7e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRrng++KKA+ELS+LCdaev +i+fsst+klye+ss XP_026450261.1 10 KIDNITSRQVTFSKRRNGLIKKAKELSILCDAEVGLIVFSSTDKLYEFSS 59 79**********************************************96 PP
2	K-box	66.5	9.3e-23	90	182	8	97
K-box 8 s...leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + +++++a+ +++e+a L+ + +nLq+ +++G++L sLs +eLq+Le+qLe sl+ + +K++ll+++i++l +k + l++en++L +k XP_026450261.1 90 NplmNASTEAKFWKREAATLRHQFQNLQEGYWQMMGQELCSLSANELQNLENQLELSLRGVHMQKDQLLTDEIRKLNQKRNLLRQENMELFNK 182 3456788999*******************************************************************************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MGRGKIVIQK IDNITSRQVT FSKRRNGLIK KAKELSILCD AEVGLIVFSS TDKLYEFSST 60 RLNTLRSDQH RSILRMNSLL ERYDTSKEEN PLMNASTEAK FWKREAATLR HQFQNLQEGY 120 WQMMGQELCS LSANELQNLE NQLELSLRGV HMQKDQLLTD EIRKLNQKRN LLRQENMELF 180 NKEHHTRQEN LDLLRKINEA RDANETDRMS HSPNGFNLEE DIKVQLSQPQ QQNCDTPRGE 240 KATTLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	8e-69	MIKC_MADS family protein