PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026450622.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 340aa    MW: 37521.6 Da    PI: 10.327
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026450622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.72e-151151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+s r  tf kRr+g++KK +ELS+LC++ +  i++++ 
  XP_026450622.1 11 ITNDSARRATFKKRRKGLMKKVSELSTLCGVSAGAIVYGPY 51
                    89************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MARKKVKLAY ITNDSARRAT FKKRRKGLMK KVSELSTLCG VSAGAIVYGP YDRTPEVWPQ  60
QPEAHRVMMR FKSLPEMDQS KKQLNQESFR YNQIGKVIEQ FKKQQRENRY MKIKEMYNHA  120
VAGKCSISHV HPSDLGDLTW VLEDKKKAVQ RKLSELKKSP KSVLQTTPAN TSSAIFTTPT  180
TSHANTTATP NPSTSTIHTN ISVGGSNGSG INGGTMAGGT GMYGGVVNNG TGGQERMTPD  240
HPRQAMEALQ NQPWFMDVMS PPSIPQPDDQ MVNYVYFLGG DQNNKNNNQM MVGGVSPPTI  300
TPSYNGGTLG DIFNNNKAWM VPANKSYVPM NNIDTSANKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYITNDSARRATFKKRR
22226KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-44M-type_MADS family protein