PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026452640.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 348aa MW: 39505.2 Da PI: 6.0018

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026452640.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.9	5.6e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s XP_026452640.1 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	25	7.7e-10	110	179	9	76
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGe..dLesLslkeLqqLeqqLekslkkiRskKnellleq 76 + +++ e lqqe++ +++i++++ e+R++ + +++s+++ e + e++L+k l i ++K+ l ++q XP_026452640.1 110 AVNSNIEDLQQEISSFQQQIQMIEAELRNFDPDpvNMSSMTMGEVDSCERNLQKTLDCITKRKEYLAHNQ 179 567899**********************998335789**********************9998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK 60 RRIEDVLTRY INLPEHDRGG AIQNRESLIL TLKNLKGQSD MALQLANPAA VNSNIEDLQQ 120 EISSFQQQIQ MIEAELRNFD PDPVNMSSMT MGEVDSCERN LQKTLDCITK RKEYLAHNQQ 180 LNSYDPSSSI QMQMFLNSQE GIPTSFGNDV ANWMPESQHN HPIQINFGSD PLMSLRDHSS 240 SVYDHQLQHG STSLHVDPRN MGECHVSNPS DGDLQTWNQT FPSTDFLSAL MPSTSFPHEM 300 VGSNMQQGMS QMLSREQLES QQNCSHMHQP QPPQTSNHCV DYENIGQQ

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK  60
RRIEDVLTRY INLPEHDRGG AIQNRESLIL TLKNLKGQSD MALQLANPAA VNSNIEDLQQ  120
EISSFQQQIQ MIEAELRNFD PDPVNMSSMT MGEVDSCERN LQKTLDCITK RKEYLAHNQQ  180
LNSYDPSSSI QMQMFLNSQE GIPTSFGNDV ANWMPESQHN HPIQINFGSD PLMSLRDHSS  240
SVYDHQLQHG STSLHVDPRN MGECHVSNPS DGDLQTWNQT FPSTDFLSAL MPSTSFPHEM  300
VGSNMQQGMS QMLSREQLES QQNCSHMHQP QPPQTSNHCV DYENIGQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	7e-77	MIKC_MADS family protein