PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026456628.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

CO-like

Protein Properties

Length: 385aa MW: 43138.1 Da PI: 6.1591

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026456628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22	3.4e-07	23	56	2	35
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35 ++r C+ ++e ++ l+C+ ++ lC +C e H+ XP_026456628.1 23 KKRLCDFCGESKALLYCKADSAKLCFQCDGEVHS 56 6789****99***************99995 PP
2	zf-B_box	20.1	1.4e-06	68	102	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgHtv 39 + C+ +++++++++C + ++ lC++C e+H +H++ XP_026456628.1 68 QLCDICDSNPASIHCSTENHVLCQNCDWETH-NHNH 102 57****************************8.5432 PP
3	CCT	60.4	6.2e-21	342	384	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ ++RYkeKrktR+++K+irYesRKa+Ae R R+KGrF+k XP_026456628.1 342 RDLMISRYKEKRKTRRYDKHIRYESRKARAEGRTRIKGRFAKI 384 566799***********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MTSKDSGRNN EVKLENIKTH EEKKRLCDFC GESKALLYCK ADSAKLCFQC DGEVHSTNPL 60 FTKHIRFQLC DICDSNPASI HCSTENHVLC QNCDWETHNH NHSHDKNLIH DRRPLEGFTG 120 CPSATELSSI LGFEDLRDKS FFDGGGGGGG SFNNLGSGFD DLFVWDTPNI ISLDDLIVSS 180 DSSQSFPAMG IPPLPKNRNT ACGKYKEDII HQLQNMLNLD INWKNECVEV ESLLGLKPLL 240 PEQPGNLCSS FKHDAEPKGY EAHAIHWQDD GGEAGNQNLM PSTFSGSYYE DSFLALDNPD 300 DVGGFGIDVT GGNEKQSQHQ VVEDTVHVVP KYAPPQLTGQ DRDLMISRYK EKRKTRRYDK 360 HIRYESRKAR AEGRTRIKGR FAKIA

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MTSKDSGRNN EVKLENIKTH EEKKRLCDFC GESKALLYCK ADSAKLCFQC DGEVHSTNPL  60
FTKHIRFQLC DICDSNPASI HCSTENHVLC QNCDWETHNH NHSHDKNLIH DRRPLEGFTG  120
CPSATELSSI LGFEDLRDKS FFDGGGGGGG SFNNLGSGFD DLFVWDTPNI ISLDDLIVSS  180
DSSQSFPAMG IPPLPKNRNT ACGKYKEDII HQLQNMLNLD INWKNECVEV ESLLGLKPLL  240
PEQPGNLCSS FKHDAEPKGY EAHAIHWQDD GGEAGNQNLM PSTFSGSYYE DSFLALDNPD  300
DVGGFGIDVT GGNEKQSQHQ VVEDTVHVVP KYAPPQLTGQ DRDLMISRYK EKRKTRRYDK  360
HIRYESRKAR AEGRTRIKGR FAKIA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	2e-70	CO-like family protein