PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026456689.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 480aa MW: 52175.5 Da PI: 8.5313

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026456689.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.9	1.3e-11	54	78	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+C yGdrC+++H++ XP_026456689.1 54 EPNCVYYMRTGFCGYGDRCRYNHPR 78 689********************96 PP
2	zf-CCCH	35.7	1.4e-11	99	124	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f+++tGtCk+G Ck++H++ XP_026456689.1 99 GQPVCEFYMKTGTCKFGVYCKYHHPR 124 6799********************96 PP
3	zf-CCCH	37.7	3.3e-12	145	169	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C+++++tG+Ck+G CkF+H+ XP_026456689.1 145 GETECSYYMKTGQCKFGLACKFHHP 169 7789********************8 PP
4	zf-CCCH	38.5	1.9e-12	308	334	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G +Ck++H+p XP_026456689.1 308 PGEPECQYYMRTGDCKFGTSCKYHHPP 334 5799*********************97 PP
5	zf-CCCH	35.8	1.4e-11	357	380	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f+++ G+Ck+G++CkF H++ XP_026456689.1 357 SPCTFYMQHGICKFGPTCKFDHPM 380 79********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MERFGKNQLI MESDPQFGWN SSSIQLSQTS SLDVAMLQLR LGNQESSYPE RPAEPNCVYY 60 MRTGFCGYGD RCRYNHPRDR SSLVVGAVRQ GGEYPQREGQ PVCEFYMKTG TCKFGVYCKY 120 HHPRTGAGTM IPAALNYYGY PIRPGETECS YYMKTGQCKF GLACKFHHPN PAGVSMLAPA 180 PAPALAPAPT FYPMVQSPSV PSQPYGGVPT SWQVPRPTLL SGSYVQGAYA PMLLPPAMVP 240 VSGWSPYRAP LSPVASPGTQ PTVRAGPLYG VAQLSSSATE YVGPYRPLPC LAVSLSSSMK 300 ERMFPERPGE PECQYYMRTG DCKFGTSCKY HHPPDWAAPE TNSGLSTMGL PLRPGASPCT 360 FYMQHGICKF GPTCKFDHPM EMLSYRSSAP ALVDMPVSPY PVCSSLATPA PPSSSSEFQP 420 EFITGSHISY STRLPSSINS TGLVGSMFSK SGPVLPHLFF GRSPPVPSRV NIGGDVRSSN

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MERFGKNQLI MESDPQFGWN SSSIQLSQTS SLDVAMLQLR LGNQESSYPE RPAEPNCVYY  60
MRTGFCGYGD RCRYNHPRDR SSLVVGAVRQ GGEYPQREGQ PVCEFYMKTG TCKFGVYCKY  120
HHPRTGAGTM IPAALNYYGY PIRPGETECS YYMKTGQCKF GLACKFHHPN PAGVSMLAPA  180
PAPALAPAPT FYPMVQSPSV PSQPYGGVPT SWQVPRPTLL SGSYVQGAYA PMLLPPAMVP  240
VSGWSPYRAP LSPVASPGTQ PTVRAGPLYG VAQLSSSATE YVGPYRPLPC LAVSLSSSMK  300
ERMFPERPGE PECQYYMRTG DCKFGTSCKY HHPPDWAAPE TNSGLSTMGL PLRPGASPCT  360
FYMQHGICKF GPTCKFDHPM EMLSYRSSAP ALVDMPVSPY PVCSSLATPA PPSSSSEFQP  420
EFITGSHISY STRLPSSINS TGLVGSMFSK SGPVLPHLFF GRSPPVPSRV NIGGDVRSSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-141	C3H family protein