PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026457170.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

CO-like

Protein Properties

Length: 441aa MW: 48258.5 Da PI: 6.0487

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026457170.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.2	1.6e-08	21	61	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ +++ + lfC+ ++ +lC +C +++H+ H+ XP_026457170.1 21 KLCDSCKSATALLFCRADSAFLCMTCDSNIHSAnklasrHE 61 68*****************************6566777776 PP
2	zf-B_box	27.1	8.8e-09	63	108	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ XP_026457170.1 63 VWMCEVCESAPASVTCKADAASLCVTCDADIHSAnplarrHERVPV 108 689*****************************66899999999986 PP
3	CCT	69.4	9.4e-24	362	405	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_026457170.1 362 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 405 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MGIQVETRRS AGGGNWSMNT KLCDSCKSAT ALLFCRADSA FLCMTCDSNI HSANKLASRH 60 ERVWMCEVCE SAPASVTCKA DAASLCVTCD ADIHSANPLA RRHERVPVVP FFESAISAAA 120 SAGNNKISSD LNFLLVPDHF VKGQPNEVVE EDEDDVVDVK TTVHHKGGDD DASWLFQNPP 180 SSKLGVVVEA VPDLMLKSGI GVGGVDYLFS DVDSYLDLDY PDIGGEKQFQ NQHQHHNQNG 240 SAGSDSVVPV ATNPIQNHPA ASFNYSENHC YEFDFSKPKP AYSFNTQSVS HSVSSSEVGV 300 VPDSSNCNSM TDISNPFSRN NGMIIDHHHG VMSTSNGMID TNTVSNGVEN AVVVTQLTGL 360 DREARVLRYR EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRTETEIE ADNQMERMYH 420 SNNPSSGGFV IDSGYGIVPS F

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MGIQVETRRS AGGGNWSMNT KLCDSCKSAT ALLFCRADSA FLCMTCDSNI HSANKLASRH  60
ERVWMCEVCE SAPASVTCKA DAASLCVTCD ADIHSANPLA RRHERVPVVP FFESAISAAA  120
SAGNNKISSD LNFLLVPDHF VKGQPNEVVE EDEDDVVDVK TTVHHKGGDD DASWLFQNPP  180
SSKLGVVVEA VPDLMLKSGI GVGGVDYLFS DVDSYLDLDY PDIGGEKQFQ NQHQHHNQNG  240
SAGSDSVVPV ATNPIQNHPA ASFNYSENHC YEFDFSKPKP AYSFNTQSVS HSVSSSEVGV  300
VPDSSNCNSM TDISNPFSRN NGMIIDHHHG VMSTSNGMID TNTVSNGVEN AVVVTQLTGL  360
DREARVLRYR EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRTETEIE ADNQMERMYH  420
SNNPSSGGFV IDSGYGIVPS F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	2e-88	CO-like family protein