PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026457767.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family ARF
Protein Properties Length: 707aa    MW: 78824 Da    PI: 6.7217
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026457767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-23132232198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ +k+a+e+     + + + +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++
  XP_026457767.1 132 FCKILTASDTSTHGGFSVLRKHANEClpaldMAQATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGESG 224
                     99****************************9444555669************************************************..44999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_026457767.1 225 ELRVGVRR 232
                     9*****98 PP
2Auxin_resp108.19.9e-36258337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F v+Y+Pr+  s+F+v+++k+++a+++k+svGmRfkm+fe+eds+err++Gt++gv d++p +W++SkWrsLk
  XP_026457767.1 258 ASHAVATETFFIVYYKPRT--SQFIVSLNKYLEAVNNKFSVGMRFKMRFEGEDSPERRFTGTIIGVGDISP-QWKDSKWRSLK 337
                     689***************6..9***********************************************99.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    
MAGVDNHRGS QQHNFSGGKT DADEDLYTEL WKVCAGPLVD VPQEGERVYY FPQGHMEQLE  60
ASMNRELNQR IPLFNLPSKI LCRVINRQLM AEQETDEAYA QITLLPLPGH DDEPTSPDPC  120
VGENPKPIVQ SFCKILTASD TSTHGGFSVL RKHANECLPA LDMAQATPTQ ELAAKDLHGY  180
EWRFKHIFRG QPRRHLLTTG WSTFVTSKRL VAGDAFVFLR GESGELRVGV RRLARQQSTM  240
PTSVISSQSM HLGVLATASH AVATETFFIV YYKPRTSQFI VSLNKYLEAV NNKFSVGMRF  300
KMRFEGEDSP ERRFTGTIIG VGDISPQWKD SKWRSLKVQW DETAPIQRPD RVSPWEIYPF  360
VPTAPPPNLI QPATIISKRS RTSVDLPVLD ITGSISSTFW YPGSTQTHEA TIFTGSEVQN  420
NETQVLRSAV QKEMKGNGNS SNSFNSRARQ EDGWATSPLG NVSLSLFQDS GKVSNSLDKW  480
PALSSYSMQD KLSKHNNCHM QDIMEKAKIP STPSGCRLFG IELVNYSSNP VSAEKVSANL  540
TASIEATPPT TLSEADSEQL SGLSKNSKDS KELKPILLQT SPNEIQSKGG STTMRSRTKV  600
HMQGIAVGRA VDLTILKGYD DLLNELEKMF EIKGELCPRN KWEVAFTDDD GDMMRVGDDH  660
WLDFCKIVKK IFIYSNQDVK KVPEVSPSLE GANNAIRVDS ELKPEQV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein