PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026458268.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 1182aa MW: 131967 Da PI: 6.425

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026458268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.9	3.3e-22	139	240	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_026458268.1 139 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfNMQPPA-QELIARDLHDNAWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 230 99***************************9555544.48********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_026458268.1 231 QQLLLGIRRA 240 889**997 PP
2	Auxin_resp	121.2	7.7e-40	265	348	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFvv+++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ XP_026458268.1 265 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVYsNQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 348 79******************************9989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1182 aa Download sequence
MKTASHGSGS AVSSATANNN TTEVGGEKKK KINSELWHAC AGPLVTLPPV GSLVVYFPQG 60 HSEQVAASMQ KDADAHIPNY PNLPSKLICL LLNVTLHADA ETDEVYAQMT LQPVSNYDKE 120 ALLASDLALK SNKPQPDFFC KTLTASDTST HGGFSVPRRA AEKIFPALDF NMQPPAQELI 180 ARDLHDNAWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVLFIRDEK QQLLLGIRRA 240 NKQPTNISSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRASPSEFVV PLAKYYKAVY 300 SNQVSLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGERR 360 NRVSLWDIEP VAAPFFICPP PFFRSKRPKQ PGMPDDESDL ENLFRRTMPW MGDDLCMKDP 420 MAQDGVIPGF SLAQLMNMQQ NPSLGGSSMQ PDYMRSLTTP VVQNMTAADL SRQLGFPGSQ 480 VLQQNLQFNG HRQSQQPQNL DQLKMPSPLN QMGSMMRPQQ SLNELSQQQR QDFVNQTISS 540 NQVQAQLLQP QFQVQQQQHQ QQQMLSHGQS NQAHTNNLVQ NQQQQQQQQQ HQQSQQQQHQ 600 QLQQQQQLLL QQQQQQLQQQ QQQQQQMQQQ QLLQQQQHQQ QLKQQPQSPP SVQLPHQVSQ 660 QLQMSEHQIQ LQLLQKLQQQ QQTLLSQQST QQLSQPTQLD EQQRQQSDLP QSLSNTNSIS 720 HRQMVQQQML KNNNIQQGIR FSHLPQQHQV QQNLQRQSSS TLAELPGLVL PTDPTTNLLQ 780 ATHSDLLVPP GCGVQSGVTE DLPSCSTSPS TNCSNVAAQP ITSIRSHHSS TPIAEEVAQS 840 SATLLSPGTL EAMSTNPTSI KEQPQQKADI KPTLPLPKSQ NQGIVGSQTY LNPLSQLDYL 900 EASSSATSVC LSQNDGSLQP NFPLSPFNPQ SLLFRDSSQD VDDHVDPRNN VLFGVNIDGP 960 LGIPMTPDTF LVKDMDPVKD FQNNLCSENM LTNYGNTKDI QQEPSSSIVS QSFGVPDMAF 1020 NSMDSTITDS GFLSKGQWGA PAPQLPRLRT FTKVYKRGAV GRSIDIARYS GYEELKQDLA 1080 RRFGIEGQLE DRQRIGWKLV YVDHENDVLL VGDDPWEEFV ICVRCIKILS PQEVQQMSLD 1140 GDLGNSMLSN QACSSSDGGN PWKTTGQYDQ NSGNPSAGSY DH

Sequence ? help Back to Top

Protein Sequence Length: 1182 aa Download sequence

MKTASHGSGS AVSSATANNN TTEVGGEKKK KINSELWHAC AGPLVTLPPV GSLVVYFPQG  60
HSEQVAASMQ KDADAHIPNY PNLPSKLICL LLNVTLHADA ETDEVYAQMT LQPVSNYDKE  120
ALLASDLALK SNKPQPDFFC KTLTASDTST HGGFSVPRRA AEKIFPALDF NMQPPAQELI  180
ARDLHDNAWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVLFIRDEK QQLLLGIRRA  240
NKQPTNISSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRASPSEFVV PLAKYYKAVY  300
SNQVSLGMRF RMMFETEESG TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESTAGERR  360
NRVSLWDIEP VAAPFFICPP PFFRSKRPKQ PGMPDDESDL ENLFRRTMPW MGDDLCMKDP  420
MAQDGVIPGF SLAQLMNMQQ NPSLGGSSMQ PDYMRSLTTP VVQNMTAADL SRQLGFPGSQ  480
VLQQNLQFNG HRQSQQPQNL DQLKMPSPLN QMGSMMRPQQ SLNELSQQQR QDFVNQTISS  540
NQVQAQLLQP QFQVQQQQHQ QQQMLSHGQS NQAHTNNLVQ NQQQQQQQQQ HQQSQQQQHQ  600
QLQQQQQLLL QQQQQQLQQQ QQQQQQMQQQ QLLQQQQHQQ QLKQQPQSPP SVQLPHQVSQ  660
QLQMSEHQIQ LQLLQKLQQQ QQTLLSQQST QQLSQPTQLD EQQRQQSDLP QSLSNTNSIS  720
HRQMVQQQML KNNNIQQGIR FSHLPQQHQV QQNLQRQSSS TLAELPGLVL PTDPTTNLLQ  780
ATHSDLLVPP GCGVQSGVTE DLPSCSTSPS TNCSNVAAQP ITSIRSHHSS TPIAEEVAQS  840
SATLLSPGTL EAMSTNPTSI KEQPQQKADI KPTLPLPKSQ NQGIVGSQTY LNPLSQLDYL  900
EASSSATSVC LSQNDGSLQP NFPLSPFNPQ SLLFRDSSQD VDDHVDPRNN VLFGVNIDGP  960
LGIPMTPDTF LVKDMDPVKD FQNNLCSENM LTNYGNTKDI QQEPSSSIVS QSFGVPDMAF  1020
NSMDSTITDS GFLSKGQWGA PAPQLPRLRT FTKVYKRGAV GRSIDIARYS GYEELKQDLA  1080
RRFGIEGQLE DRQRIGWKLV YVDHENDVLL VGDDPWEEFV ICVRCIKILS PQEVQQMSLD  1140
GDLGNSMLSN QACSSSDGGN PWKTTGQYDQ NSGNPSAGSY DH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein