PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026458958.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 245aa    MW: 27552.2 Da    PI: 4.9744
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026458958.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.52e-192063245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +i nks+ qvtfskRr+g++KK  ELSvL++ae a+i fs+ gk
  XP_026458958.1 20 KITNKSRLQVTFSKRRKGLFKKETELSVLTGAETALIAFSPAGK 63
                    799**************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MKMKKQRKGG EGRRKIKIEK ITNKSRLQVT FSKRRKGLFK KETELSVLTG AETALIAFSP  60
AGKPFVCGNP DLILERFLNN INGEASEIQM MMMNNRGASE IQKNDDEAEK KRGVFLESLI  120
NSGLGPSSDK SRLDIYMNGL NLDELIPMRS DMEQLQKCVA KRSHDLKMMT SNTASSSSCS  180
SSSYEDKSLI ALMDKPAGNE IVDDDYLNKE MINELLFDSQ EYEFGFGNTT STDEEITADM  240
FSDDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-18M-type_MADS family protein