PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026458962.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 249aa    MW: 28571.9 Da    PI: 4.3917
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026458962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.41.2e-202165145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    ++i++ks+ qvtfskRr+g++KKA ELSvL++ ++a+i fs+ g+
  XP_026458962.1 21 EKIKDKSKLQVTFSKRRKGLFKKATELSVLTGSQIALIAFSPAGR 65
                    579***************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MMMEMKKQRP GGDGRKKIKI EKIKDKSKLQ VTFSKRRKGL FKKATELSVL TGSQIALIAF  60
SPAGRPYVCG NPDLILDRFL NNINGEAREI QKDDDDEQQR RCLEVERELE AEKKRGFLLE  120
SLVNCDLGPD NDKFWWNTYV DGLSLDELMQ MRSDMEQLQK CVTKRSHDLQ MTSNNTASSS  180
SSSSYEDKSL ALMTIPSGNE IVDDDYQNEE MVNELLFDFD SQEYEFGIGN TTSTDQEEIT  240
ADIFSDDYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-21M-type_MADS family protein