PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026458977.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 244aa    MW: 27770.2 Da    PI: 4.8942
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026458977.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.52e-192063245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +i nks+ qvtfskRr+g++KK  ELSvL++ae a+i fs+ gk
  XP_026458977.1 20 KITNKSRLQVTFSKRRKGLFKKETELSVLTGAETALIAFSPAGK 63
                    799**************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MKMKKQRKGG EGRRKIKIEK ITNKSRLQVT FSKRRKGLFK KETELSVLTG AETALIAFSP  60
AGKPFVCGNP DLILERFLNN INGEASEIQK DDDEQQRRYM QKNDDEAEKK RGVFLESLIN  120
SGLGPSSDKS RWDIYINGLN LDELIPMRSD MEQLQKCVAK RSHDLKMMTS NTTSSSSCSS  180
SSYEDKSLIA LMDKPAGNEI VDDDYLNKEM INEFLFDSQE YEFGFGNTTS TDEEITADMF  240
SDDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-18M-type_MADS family protein