PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026458978.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 225aa    MW: 25512.9 Da    PI: 5.2124
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026458978.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.79.9e-211963145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    ++i++ks+ qvtfskRr+g++KKA ELSvL++ ++a+i fs+ g+
  XP_026458978.1 19 EKIKDKSKLQVTFSKRRKGLFKKATELSVLTGSQIALIAFSPAGR 63
                    579***************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MEMKKQRQGG DGRKKIKIEK IKDKSKLQVT FSKRRKGLFK KATELSVLTG SQIALIAFSP  60
AGRPYVCGNP DLILDRFLNN INGEAREIQK DEQQRRCLEA EKKRGVLLGS LVNCDLGPDN  120
DKFWWNTYVD LLSLDELIQM RSDMEQLQKC VAQRSHDLQM TSNNTAASSS CCSSYEDKSL  180
ALMTISAGNE IVDDDYQNKE MVNELLFDFD SQEYEFGIGN TTSTD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-18M-type_MADS family protein