PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026459678.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

GRAS

Protein Properties

Length: 409aa MW: 46273.4 Da PI: 4.9625

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026459678.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	95.8	6.6e-30	228	392	2	164
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.......fsevsP 89 +lLl+ Ae v++++++la++lL++ l+s +g+p+qR++ y++e+L+ r+ r++ ++ l+ se + ++ +++ +a+ + +++ P XP_026459678.1 228 AQLLLASAESVNNKQFNLASRLLTQCDYLSSTTGNPVQRVVYYYAEGLRDRIDRETGRIP--LKISEGRGEQPIDVDKAMMTlnpallaCHQTLP 320 689*************************************************666665..45555554453333333322244666689 PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetger 164 + k+ +++ qaI++ v ++++vH iDf+i G+Q L+qaLasR + p l+iT+vg ++ +eetg+r XP_026459678.1 321 FGKVLQFAGIQAIVDNVTSASKVHLIDFGIRIGMQGTVLMQALASRHQCPIeLLKITAVGT----LRQPIEETGKR 392 *******************************************6665499*****....77888888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MMNAVFACEN YEFEGDQEVY GDPTRIYEKK ERIVNRNELH PFSGYEDWEG INNLCTLDYG 60 IYHENTLQKG TWFPKDQEQL FSDFPMLDNF QLNMGFPPVH QSIITQDSIV FHSDMHEIPD 120 LVEEKKDKGK KENMCPTSLT SLELLNIYTK RLKKLKDERR SNELQNEAKF TTVDNGGRLS 180 TEEVFRVAGA RFIQLSAKQE DDMIVITNQF DCSISSLSDE EGKDVELAQL LLASAESVNN 240 KQFNLASRLL TQCDYLSSTT GNPVQRVVYY YAEGLRDRID RETGRIPLKI SEGRGEQPID 300 VDKAMMTLNP ALLACHQTLP FGKVLQFAGI QAIVDNVTSA SKVHLIDFGI RIGMQGTVLM 360 QALASRHQCP IELLKITAVG TLRQPIEETG KRNANESSKK PESMCNGGH

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MMNAVFACEN YEFEGDQEVY GDPTRIYEKK ERIVNRNELH PFSGYEDWEG INNLCTLDYG  60
IYHENTLQKG TWFPKDQEQL FSDFPMLDNF QLNMGFPPVH QSIITQDSIV FHSDMHEIPD  120
LVEEKKDKGK KENMCPTSLT SLELLNIYTK RLKKLKDERR SNELQNEAKF TTVDNGGRLS  180
TEEVFRVAGA RFIQLSAKQE DDMIVITNQF DCSISSLSDE EGKDVELAQL LLASAESVNN  240
KQFNLASRLL TQCDYLSSTT GNPVQRVVYY YAEGLRDRID RETGRIPLKI SEGRGEQPID  300
VDKAMMTLNP ALLACHQTLP FGKVLQFAGI QAIVDNVTSA SKVHLIDFGI RIGMQGTVLM  360
QALASRHQCP IELLKITAVG TLRQPIEETG KRNANESSKK PESMCNGGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-13	GRAS family protein