PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026459887.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

HD-ZIP

Protein Properties

Length: 250aa MW: 28808.2 Da PI: 9.2165

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026459887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.8e-18	104	158	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+++++++ +++eLA++l+L rqV vWFqNrRa+ k XP_026459887.1 104 RKKLRLTKEQANLLETSFKQHNTLNMMQKQELAERLDLRPRQVEVWFQNRRARTK 158 788899***********************************************98 PP
2	HD-ZIP_I/II	112.9	2e-36	104	192	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLE+sF+++++L+ +K+ela++L+l+prqv+vWFqnrRARtk+k++E+d+e+Lk+++++l+een+rL+ke +eLr+ XP_026459887.1 104 RKKLRLTKEQANLLETSFKQHNTLNMMQKQELAERLDLRPRQVEVWFQNRRARTKLKKTEVDCEVLKKCVERLNEENRRLKKELHELRS 192 69*************************************************************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGGDREEEEE TCDIGLSLRL GSGGFTSRST NEVKHKTSGV QLSLLFPSNP KEEIVNDYHG 60 KNDGDRWSSK TVNQNDQEEH AKIVKRDNTS VDSNIDKYDH TNTRKKLRLT KEQANLLETS 120 FKQHNTLNMM QKQELAERLD LRPRQVEVWF QNRRARTKLK KTEVDCEVLK KCVERLNEEN 180 RRLKKELHEL RSVKLEPPSS SSFYPHHMPK NVAASAMCRN CNKVSNKSSS ENKHNTLTLF 240 SDIGNANDKI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	109	TRKKLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	5e-44	HD-ZIP family protein