PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026460352.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family GRAS
Protein Properties Length: 514aa    MW: 56658.6 Da    PI: 5.6964
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026460352.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3398.2e-1041154981373
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalklfse 86 
                     lv+lL+++Aea++  +++  l++ +L rl+el+sp+  ++m+RlaayfteAL++ l + ++  +k+ +  + ++ +       +++laa++l+++
  XP_026460352.1 115 LVHLLMAAAEALTGANKSreLVKVILVRLKELVSPTNgTNMERLAAYFTEALQSLLEGAGHVHSKQHHGGTHHSISgtqnlnPTDVLAAFQLLQD 209
                     68**********987665459***********9987669*****************99655555544333332222334456999********** PP

            GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                     +sP++kf+h+taNqaIleav++++rvHiiD+di++G+QW++L+qaL sR++gpp  +lRiT++++ ++g  s  +++etg+rL  fA+++g+pf+
  XP_026460352.1 210 MSPYVKFGHFTANQAILEAVKHDRRVHIIDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALARGNTGrkSIGTVQETGRRLLAFAASIGLPFS 304
                     **************************************************776556*********998888999********************* PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfd 269
                     f+    +  e++++++L++ +gEal++n++l+  ++       ++   ++L+  ksl+Pk+v++ve+e+  ++e    F+ rf+++l++ysa+fd
  XP_026460352.1 305 FHQCRLDPDESFRPSNLKLVKGEALIINCMLHFPHFS---CRAPNSVASFLSGAKSLNPKLVTLVEEEMGGSDEyggGFVGRFMDSLHHYSAVFD 396
                     ***9999************************998887...666666779*******************8776655559***************** PP

            GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWk 363
                     slea++p ++++r+ vE+++lg++i   +a   +  +e+  +   W +++  aGF+ v +s ++ +q klll  ++ dgyrvee  ++ +vlgWk
  XP_026460352.1 397 SLEAGFPLQNRARALVEKVFLGPRIAGRLAGIYR--TEQDGEECCWGDWIVGAGFSGVGISFFNHCQSKLLLGLFN-DGYRVEELhNNKIVLGWK 488
                     ***************************9986665..58888899********************************.******87478888**** PP

            GRAS 364 drpLvsvSaW 373
                     +r+L+s+S W
  XP_026460352.1 489 SRRLISASLW 498
                     ********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    
MAMAMEVDFS DFDFSGHSTT STTTTTEDDV TCNWNDSSPV IDWDVFSGDT DGFRGLIESM  60
MSDPDELDID HMVRGDHHEY SSDSLYFGEP TEIIQNHDSV TTSNTSSDDS NGLRLVHLLM  120
AAAEALTGAN KSRELVKVIL VRLKELVSPT NGTNMERLAA YFTEALQSLL EGAGHVHSKQ  180
HHGGTHHSIS GTQNLNPTDV LAAFQLLQDM SPYVKFGHFT ANQAILEAVK HDRRVHIIDY  240
DIMEGIQWAS LMQALVSRKD GPPTPHLRIT ALARGNTGRK SIGTVQETGR RLLAFAASIG  300
LPFSFHQCRL DPDESFRPSN LKLVKGEALI INCMLHFPHF SCRAPNSVAS FLSGAKSLNP  360
KLVTLVEEEM GGSDEYGGGF VGRFMDSLHH YSAVFDSLEA GFPLQNRARA LVEKVFLGPR  420
IAGRLAGIYR TEQDGEECCW GDWIVGAGFS GVGISFFNHC QSKLLLGLFN DGYRVEELHN  480
NKIVLGWKSR RLISASLWSY HQTSPLTSDS DVSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-159GRAS family protein