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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_026460542.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 227aa MW: 26474.8 Da PI: 5.4747 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 60.6 | 2.5e-19 | 75 | 129 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
k++++t+ q++ Le+ F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+
XP_026460542.1 75 KKRKLTDLQVTLLEQNFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKN 129
45689************************************************95 PP
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| 2 | HD-ZIP_I/II | 116.6 | 1.4e-37 | 75 | 166 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
kkr+l++ qv+lLE++F e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d++ ++++Le+ev +L+e+l+e
XP_026460542.1 75 KKRKLTDLQVTLLEQNFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKSSHDNVILQKCHLEAEVLQLKERLSE 166
9**************************************************************************************99976 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 227 aa Download sequence |
MSSSYTTSDE ILGMDDQNQM LLFSQQFYPD SYNQLIPQEI KLESSETKPK RRRRKNKGGD 60 VLSSEDIKVG NSLMKKRKLT DLQVTLLEQN FGDEHKLESE RKDKLAAELG LDPRQVAVWF 120 QNRRARWKNK KLEEEYSKLK SSHDNVILQK CHLEAEVLQL KERLSETEKE LRRVTEQFDG 180 VSICSPNSSF SVDVEQHYLG GEFNMVEAGY DNLLYIPENN WVNLYGF |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 49 | 56 | PKRRRRKN |
| 2 | 50 | 55 | KRRRRK |
| 3 | 50 | 78 | KRRRRKNKGGDVLSSEDIKVGNSLMKKRK |
| 4 | 51 | 79 | KRRRRKNKGGDVLSSEDIKVGNSLMKKRK |
| 5 | 52 | 80 | KRRRRKNKGGDVLSSEDIKVGNSLMKKRK |
| 6 | 75 | 103 | KRRRRKNKGGDVLSSEDIKVGNSLMKKRK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G36740.1 | 3e-54 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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