PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026460608.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 712aa MW: 79843.2 Da PI: 5.9123

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026460608.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.8	8.7e-23	154	255	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f k+lt sd++++g +++ k++a+e+ ++++ s++l+ +d++g +W +++ yr++++r+++t+GW+++v++++L +gD++vF + +++ XP_026460608.1 154 FSKILTASDTSTHGGFSVLKRHADEClppldMSQQLPSQELVARDLHGAEWHFRHVYRGHPKRHLFTTGWSNYVSSKKLVTGDTFVFL--RGENG 246 889*************************9555666789********************************************..44999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 el+v+v+r+ XP_026460608.1 247 ELRVGVRRA 255 9***996 PP
2	Auxin_resp	112.4	4.5e-37	280	361	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 ++ha+st+++F+v+Y+Pr+s+seF ++++++++++k+k+s+G Rf+m+fe+e+++++r+ Gt+vg+ d+dpvrWp+SkWr+L XP_026460608.1 280 VSHAISTGTMFSVYYRPRMSPSEFLIPYNEYMSSVKNKYSIGLRFRMKFEGEECPKQRIVGTIVGIDDVDPVRWPRSKWRCL 361 679******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence
MGIDGVEERL LNLEEMFPNL EEGPATTTTT AYVHEGLSHT NNQYEKDELY TELWHACAGP 60 LVNIPHVGDR VFYLPQGHLE QVEAYTNQEF DLQLPKHNLP SQILCRVVYV QLKAELETDE 120 VFAQVTLLPE TKEEMSGIEE ETSRSFIGSH SRSFSKILTA SDTSTHGGFS VLKRHADECL 180 PPLDMSQQLP SQELVARDLH GAEWHFRHVY RGHPKRHLFT TGWSNYVSSK KLVTGDTFVF 240 LRGENGELRV GVRRAMETQQ NASSSVISCR SMQLGVLATV SHAISTGTMF SVYYRPRMSP 300 SEFLIPYNEY MSSVKNKYSI GLRFRMKFEG EECPKQRIVG TIVGIDDVDP VRWPRSKWRC 360 LTVTWDEPCL TAVRPQRVSP WTIELSDNAR TNSLPVQLKM TRRVRTQHSS SADSSILDDG 420 SSKNTFNQPP PRKRHSGVLQ GQESAISAIE LGTIRQPPLA PSLIPNLEWG QAPKKFESGN 480 HLNIQFSPDL CCTVPISSLM PNDFGLNNCI PLSSTYDTRG NTGLSLSNWS VLNEKHNKPE 540 SKETNVVTKS NSDGKCMLFG VDLVKLPTES ASPHVISPPE FVNSEQLSGP SKMMKRCDSS 600 NSDGDSEKLL QNCPVTTRSC TKVLKYGTAL GRSVDLMKLG GYDELIDELD RMFDFNGALI 660 ERSNGWNVIY VDDEGDTMQI GDYPWQEFQL MARKLLICPK EDMDGLNPLP GP

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence

MGIDGVEERL LNLEEMFPNL EEGPATTTTT AYVHEGLSHT NNQYEKDELY TELWHACAGP  60
LVNIPHVGDR VFYLPQGHLE QVEAYTNQEF DLQLPKHNLP SQILCRVVYV QLKAELETDE  120
VFAQVTLLPE TKEEMSGIEE ETSRSFIGSH SRSFSKILTA SDTSTHGGFS VLKRHADECL  180
PPLDMSQQLP SQELVARDLH GAEWHFRHVY RGHPKRHLFT TGWSNYVSSK KLVTGDTFVF  240
LRGENGELRV GVRRAMETQQ NASSSVISCR SMQLGVLATV SHAISTGTMF SVYYRPRMSP  300
SEFLIPYNEY MSSVKNKYSI GLRFRMKFEG EECPKQRIVG TIVGIDDVDP VRWPRSKWRC  360
LTVTWDEPCL TAVRPQRVSP WTIELSDNAR TNSLPVQLKM TRRVRTQHSS SADSSILDDG  420
SSKNTFNQPP PRKRHSGVLQ GQESAISAIE LGTIRQPPLA PSLIPNLEWG QAPKKFESGN  480
HLNIQFSPDL CCTVPISSLM PNDFGLNNCI PLSSTYDTRG NTGLSLSNWS VLNEKHNKPE  540
SKETNVVTKS NSDGKCMLFG VDLVKLPTES ASPHVISPPE FVNSEQLSGP SKMMKRCDSS  600
NSDGDSEKLL QNCPVTTRSC TKVLKYGTAL GRSVDLMKLG GYDELIDELD RMFDFNGALI  660
ERSNGWNVIY VDDEGDTMQI GDYPWQEFQL MARKLLICPK EDMDGLNPLP GP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	1e-173	ARF family protein