PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027060871.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 181aa    MW: 20404.7 Da    PI: 5.0157
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027060871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.21.7e-2086176190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                     kfYn YAk  GF +rks+ k+   +g    r+ vC  eg+r+e+  + ++++r+ ++ trtgC a+++vk +  + k++vt++  eHnH+la
  XP_027060871.1  86 KFYNLYAKLSGFGIRKSNAKRD-ADGISRFRKSVCCYEGYRNEKWFNyEDRKREAKPITRTGCGACFRVKYDVeSVKYVVTHFIMEHNHPLA 176
                     6****************98887.88888899999999999999987767889999*****************9899**************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MGQDGALKTH DMLQETENGK IGMDGCGRLR SFDLNQELEC DRDTFSEESG GSIGGHEDEE  60
ADELVGAIGV DDVMKLTFDT EEKAGKFYNL YAKLSGFGIR KSNAKRDADG ISRFRKSVCC  120
YEGYRNEKWF NYEDRKREAK PITRTGCGAC FRVKYDVESV KYVVTHFIME HNHPLASEAS  180
V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.16e-13FAR1 family protein