PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027060958.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 236aa MW: 26527 Da PI: 6.6746

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027060958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.3	2.1e-06	25	64	2	40
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STC CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas.kapskKlsK 40 +++ ++ E++RRd++++ ++L +llP++ k+ ++ ++K XP_027060958.1 25 KTKRKITEKNRRDQMKNLCNKLYRLLPSDIsKGLCPQPDK 64 567899**********************744333333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MLSLYQPNFG FKNMETFHAS ASNTKTKRKI TEKNRRDQMK NLCNKLYRLL PSDISKGLCP 60 QPDKIEDATY HIKSMEKKLE DYQEIKKKLL HGKRPCSSAS SESNNSSTLT DVEVQDIGPD 120 ANMILISGLE EQASFYGIIR RLHAEGFEVV TANFSNTGTS TLQVVHEKVS SQVGASTSGS 180 ETTAVSKRLK ELIYGYPQGE VESKLDLLDF EIVPDLLTSD FFGPFATEKF CFLQQY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	38	EKNRRDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-12	bHLH family protein