PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027061493.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

DBB

Protein Properties

Length: 237aa MW: 26291.8 Da PI: 5.1723

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027061493.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.4	9.4e-06	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ ++ C ++ lC++C le H H+ XP_027061493.1 4 LCDVCEKAQAAVICCADEAALCAKCDLEVHAAnklaskHQ 43 7****99*******************6566666665 PP
2	zf-B_box	27.5	6.5e-09	53	94	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + + C+ + ek + +fC +++ l+C+dC + +H+ H XP_027061493.1 53 KLPPCDICREKAAFIFCVEDRALFCRDCDEPIHSAntlaanH 94 6789*****************************655566666 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MKILCDVCEK AQAAVICCAD EAALCAKCDL EVHAANKLAS KHQRLHLQSL SNKLPPCDIC 60 REKAAFIFCV EDRALFCRDC DEPIHSANTL AANHQRFLAT GIRVALSSSC NKEGVKSHME 120 PQPPKQQFSS KMPTQQLSSM TSSSWAVDDL LQFSDYDSSD KKGQLEFGEL EWFSDIGLFG 180 ERAGEEALSA AEVPQLPVPQ SSNGASHKTP KLYMPYKKPR IELEDDEKEY FTVPDFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	3e-98	DBB family protein