PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027061618.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 350aa MW: 38848.8 Da PI: 6.5842

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027061618.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.1e-16	32	79	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell ++k+ G g+W+t +++ g+ R++k+c++rw +yl XP_027061618.1 32 RGPWTPEEDELLSTYIKREGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 79 89****************************99**********97 PP
2	Myb_DNA-binding	44.9	2.7e-14	91	130	7	48
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_027061618.1 91 DEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 130 8*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MRNPSSKPQA AAAANSTGAG ASSNKTKVGL KRGPWTPEED ELLSTYIKRE GEGRWRTLPK 60 KAGLLRCGKS CRLRWMNYLR PSVKRGHIAW DEEDLILRLH RLLGNRWSLI AGRIPGRTDN 120 EIKNYWNTHL SKKLISQGID PRTHKPLEPN YSDSNNENKA SSSKLHHTVA DHPSSSSYEP 180 SAAVVSRDAS TSNIPIDGIE FNSDDQYQNP ETAAGKVHVN MQNADHEGDV TYGMDLRSSH 240 EGFSNEDDDD TNYCTDDIFS SFLNSLINED AFNSPNLLQQ QQLQPNSTST ATDCDALISS 300 TTAFTFGPGW DAPSVASTTS SDHNDPKLTN EKVEKQFCSK YTLSLMKPRC

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MRNPSSKPQA AAAANSTGAG ASSNKTKVGL KRGPWTPEED ELLSTYIKRE GEGRWRTLPK  60
KAGLLRCGKS CRLRWMNYLR PSVKRGHIAW DEEDLILRLH RLLGNRWSLI AGRIPGRTDN  120
EIKNYWNTHL SKKLISQGID PRTHKPLEPN YSDSNNENKA SSSKLHHTVA DHPSSSSYEP  180
SAAVVSRDAS TSNIPIDGIE FNSDDQYQNP ETAAGKVHVN MQNADHEGDV TYGMDLRSSH  240
EGFSNEDDDD TNYCTDDIFS SFLNSLINED AFNSPNLLQQ QQLQPNSTST ATDCDALISS  300
TTAFTFGPGW DAPSVASTTS SDHNDPKLTN EKVEKQFCSK YTLSLMKPRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-77	MYB family protein