PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027062259.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 479aa    MW: 51554.2 Da    PI: 6.3042
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027062259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.48.5e-1091234763374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lLl+cAe+v+ + l  a++lL ++ el+sp g++ +R+aayf+ AL+ar+++s  ++y+ l+ ++ ++++ ++ ++al++++ +sP++kfsh+t
  XP_027062259.1 123 GLLLQCAECVAMDRLDDASNLLPEIAELSSPFGSSAERVAAYFADALSARIVSSYLGTYAPLTIKSLTKSHNQKLFNALQTYNSISPLIKFSHFT 217
                     58********************************************************************************************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.el 191
                     aNqaI +a++ge++vH+iD+di+qGlQWp L++ LasRp++  sl+iTg+gs    s e le+tg+rL++fA +lg+pfefn++ + ++ ++ +l
  XP_027062259.1 218 ANQAIFQALHGEDHVHVIDLDIMQGLQWPGLFHILASRPRKIKSLKITGLGS----SMELLESTGRRLSEFAGSLGLPFEFNPV-EGKIGNVkDL 307
                     ****************************************************....***************************6.5555555489 PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                      +Lrv  gE++++++++  h l+    +++       + + +l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l+++s er++vE
  XP_027062259.1 308 GQLRVMAGETIVIHWMH--HCLY----DITG------SDFGTLRPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLGTDSVERHTVE 389
                     ***************98..5565....3333......5688****************.789********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++llg ei+n+va  g +r+ + + +e+  e l++ GF+pv+l  + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  XP_027062259.1 390 QQLLGCEIRNIVAVGGPKRTGEVK-VERLGEELRRIGFRPVSLAGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 476
                     ******************998887.99999*********************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    
MLQSLLHSNS TATSASNPIN SVPIHIPLPP SRNARPSSNS SSSSSSMQSK RSSSAHHDDP  60
SSSLLKRRRS SLGPDNPSTS ADRTTDLDNE DDDVAELEAA AAAASLGGAA AGDTESSGLR  120
LLGLLLQCAE CVAMDRLDDA SNLLPEIAEL SSPFGSSAER VAAYFADALS ARIVSSYLGT  180
YAPLTIKSLT KSHNQKLFNA LQTYNSISPL IKFSHFTANQ AIFQALHGED HVHVIDLDIM  240
QGLQWPGLFH ILASRPRKIK SLKITGLGSS MELLESTGRR LSEFAGSLGL PFEFNPVEGK  300
IGNVKDLGQL RVMAGETIVI HWMHHCLYDI TGSDFGTLRP KLITIVEQDL SHGGSFLGRF  360
VEALHYYSAL FDALGDGLGT DSVERHTVEQ QLLGCEIRNI VAVGGPKRTG EVKVERLGEE  420
LRRIGFRPVS LAGNPAAQAS LLLGMFPWKG YTLVEENGCL KLGWKDLSLL TASAWQPSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-176GRAS family protein