PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027062383.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 512aa MW: 57683.8 Da PI: 7.9913

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027062383.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.4e-08	257	277	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+r G C++Gd+C +aHg XP_027062383.1 257 VCSEFRR-GNCSRGDNCEYAHG 277 7****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MTFSLQAQQE GLLHAIVLCR AATYLTLHAN SLYYAATHHS AHPSHHPRHS FTPSFSPLTF 60 SLNYEYINPF FNLYVFVHPP APSLSHIFSP FSTLLFHVPH PLERNEKSFT VFLNPMSLST 120 FSSSSDMTSV FADQQQQHKF HQLSYLNKKS PREIEIPPRK LLSRRAAASG SMHLDSGDMF 180 MDSPKAEEAL LQKFLPYNNI DDDDADPYSS DHFRMYEFKV RKCTRSRSHD WTDCPFAHPG 240 EKARRRDPRR YHYSGTVCSE FRRGNCSRGD NCEYAHGVFE CWLHPSRYRT EACKDGKNCK 300 RKVCFFAHSP RQLRVLPASC HETASSPVNS PVEKQQQHHR NVNHCCMYCH SVAASPTSTL 360 MGMSHLSPPL SPPLSPPISP AKAAQFSPVS RYKDHFASVE PCGMAQFGSG GMGGMSYKDA 420 LAELMSSIEA MRVNESSSRA AASNNGISLP WIDVNFNGDD QQQFILSPST PSPGTSKFLS 480 RNFPSRNFIE ENKFTENGLA GPDLEWVNDL LT

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MTFSLQAQQE GLLHAIVLCR AATYLTLHAN SLYYAATHHS AHPSHHPRHS FTPSFSPLTF  60
SLNYEYINPF FNLYVFVHPP APSLSHIFSP FSTLLFHVPH PLERNEKSFT VFLNPMSLST  120
FSSSSDMTSV FADQQQQHKF HQLSYLNKKS PREIEIPPRK LLSRRAAASG SMHLDSGDMF  180
MDSPKAEEAL LQKFLPYNNI DDDDADPYSS DHFRMYEFKV RKCTRSRSHD WTDCPFAHPG  240
EKARRRDPRR YHYSGTVCSE FRRGNCSRGD NCEYAHGVFE CWLHPSRYRT EACKDGKNCK  300
RKVCFFAHSP RQLRVLPASC HETASSPVNS PVEKQQQHHR NVNHCCMYCH SVAASPTSTL  360
MGMSHLSPPL SPPLSPPISP AKAAQFSPVS RYKDHFASVE PCGMAQFGSG GMGGMSYKDA  420
LAELMSSIEA MRVNESSSRA AASNNGISLP WIDVNFNGDD QQQFILSPST PSPGTSKFLS  480
RNFPSRNFIE ENKFTENGLA GPDLEWVNDL LT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	1e-78	C3H family protein