PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027062444.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HSF
Protein Properties Length: 443aa    MW: 49802.3 Da    PI: 5.4545
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027062444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.42.6e-34151052101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye++ed+ +++++sws++g sf+v+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+k++ ++         weF ++ F +g+++ll++
  XP_027062444.1  15 FLTKTYEMVEDPMTNSIVSWSHSGLSFIVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKSDPDQ---------WEFLNEDFIRGQRHLLRN 100
                     9**************************************************************99988.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i r+k
  XP_027062444.1 101 IYRRK 105
                     ***98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    
MMDGSNGGST ASAPFLTKTY EMVEDPMTNS IVSWSHSGLS FIVWNPPEFA RDLLPKYFKH  60
NNFSSFIRQL NTYGFRKSDP DQWEFLNEDF IRGQRHLLRN IYRRKPIHSH SVQGNSAVPL  120
GNAERQSFQE EIERLKGEKN LLQSELERHK QESREFETEV NSLAERLRNI DNRQRQLMAC  180
LAQLLQKPGF ASGLMQQSEN HNKRRRLLIS NYLYDEANIG QSPVVSFQPE NPNLCLPVLN  240
AELIEKLDAS VNFWETFLYG MCSSSAEEMY GFACLPHPPP LTITGPLASS GDSDVNVQPC  300
SSNSLRSSPS GEFHSSPELV VSSNHVDSPA TSSPCLDMDS RSKSSGIDVN TSPATIMEIE  360
TSKDRVGIVS ASAPAGTNDV FWQQFLTETP GSSDTQEVQS ERREIAARSS DSRLADHHRT  420
WWNKNNVENL TEQMGHLTPA EKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203207KRRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.13e-96HSF family protein