PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027062467.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 494aa MW: 53872.6 Da PI: 4.9837

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027062467.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.1	2.6e-15	29	76	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll ++v++ G g+W+++ r g+ R++k+c++rw ++l XP_027062467.1 29 KGPWTANEDALLMEYVRKNGEGNWNAVQRNSGLMRCGKSCRLRWSNHL 76 79*******************************************996 PP
2	Myb_DNA-binding	49.1	1.4e-15	82	125	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ l+v++++++G++ W++ a+ ++ gRt++++k++w++ XP_027062467.1 82 KGAFTQDEEALIVNLHAKFGNK-WARMASQLP-GRTDNEIKNYWNT 125 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MAPDRSPSRK SSAASTSRSG GSLRHIMKKG PWTANEDALL MEYVRKNGEG NWNAVQRNSG 60 LMRCGKSCRL RWSNHLRPNL KKGAFTQDEE ALIVNLHAKF GNKWARMASQ LPGRTDNEIK 120 NYWNTRLKRR QRAGLPLYPV DIQPLNQYQP QNLQPSPSLV SFITAVDGKP KHSTPISIFD 180 MFNPTTPPAS TSQNQPLPSF LSDPSPNFKP AHNKNGIALS LSSVNSLLSL TSASLAFNNQ 240 GPSPLGASLP MPSLQFNCLN FGIANTVPVS HASFAQNDTG SGSNMGLPAI QSLVPETTSS 300 GSDYMIATSS DADDRDEGHD HQGLSHGNSG LLEDVIDESQ ALTRAEKPKE TCLNAEKSQG 360 EFLWDYKLME DVGGNVGEES DLNAILDEPY KDSTPTHSSI GVETTNASSQ KSNPVEDDLF 420 NLLDDIPLPV TMPDWYDGNG NDIDGQCSNW IEGDAGKENH QPEPSYSPVA TTPEITDNNW 480 TDGASYWKNL PGIY

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MAPDRSPSRK SSAASTSRSG GSLRHIMKKG PWTANEDALL MEYVRKNGEG NWNAVQRNSG  60
LMRCGKSCRL RWSNHLRPNL KKGAFTQDEE ALIVNLHAKF GNKWARMASQ LPGRTDNEIK  120
NYWNTRLKRR QRAGLPLYPV DIQPLNQYQP QNLQPSPSLV SFITAVDGKP KHSTPISIFD  180
MFNPTTPPAS TSQNQPLPSF LSDPSPNFKP AHNKNGIALS LSSVNSLLSL TSASLAFNNQ  240
GPSPLGASLP MPSLQFNCLN FGIANTVPVS HASFAQNDTG SGSNMGLPAI QSLVPETTSS  300
GSDYMIATSS DADDRDEGHD HQGLSHGNSG LLEDVIDESQ ALTRAEKPKE TCLNAEKSQG  360
EFLWDYKLME DVGGNVGEES DLNAILDEPY KDSTPTHSSI GVETTNASSQ KSNPVEDDLF  420
NLLDDIPLPV TMPDWYDGNG NDIDGQCSNW IEGDAGKENH QPEPSYSPVA TTPEITDNNW  480
TDGASYWKNL PGIY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	5e-68	MYB family protein