PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027062468.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 464aa MW: 50931.2 Da PI: 4.9837

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027062468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.2	2.4e-15	29	76	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll ++v++ G g+W+++ r g+ R++k+c++rw ++l XP_027062468.1 29 KGPWTANEDALLMEYVRKNGEGNWNAVQRNSGLMRCGKSCRLRWSNHL 76 79*******************************************996 PP
2	Myb_DNA-binding	49.2	1.2e-15	82	125	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ l+v++++++G++ W++ a+ ++ gRt++++k++w++ XP_027062468.1 82 KGAFTQDEEALIVNLHAKFGNK-WARMASQLP-GRTDNEIKNYWNT 125 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MAPDRSPSRK SSAASTSRSG GSLRHIMKKG PWTANEDALL MEYVRKNGEG NWNAVQRNSG 60 LMRCGKSCRL RWSNHLRPNL KKGAFTQDEE ALIVNLHAKF GNKWARMASQ LPGRTDNEIK 120 NYWNTRLKRR QRAGLPLYPV DIQPLNQYQP QNLQPSPSLV SFITAVDGKP KHSTPISIFD 180 MFNPTTPPAS TSQNQPLPSF LSDPSPNFKP AHNKNGASLP MPSLQFNCLN FGIANTVPVS 240 HASFAQNDTG SGSNMGLPAI QSLVPETTSS GSDYMIATSS DADDRDEGHD HQGLSHGNSG 300 LLEDVIDESQ ALTRAEKPKE TCLNAEKSQG EFLWDYKLME DVGGNVGEES DLNAILDEPY 360 KDSTPTHSSI GVETTNASSQ KSNPVEDDLF NLLDDIPLPV TMPDWYDGNG NDIDGQCSNW 420 IEGDAGKENH QPEPSYSPVA TTPEITDNNW TDGASYWKNL PGIY

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MAPDRSPSRK SSAASTSRSG GSLRHIMKKG PWTANEDALL MEYVRKNGEG NWNAVQRNSG  60
LMRCGKSCRL RWSNHLRPNL KKGAFTQDEE ALIVNLHAKF GNKWARMASQ LPGRTDNEIK  120
NYWNTRLKRR QRAGLPLYPV DIQPLNQYQP QNLQPSPSLV SFITAVDGKP KHSTPISIFD  180
MFNPTTPPAS TSQNQPLPSF LSDPSPNFKP AHNKNGASLP MPSLQFNCLN FGIANTVPVS  240
HASFAQNDTG SGSNMGLPAI QSLVPETTSS GSDYMIATSS DADDRDEGHD HQGLSHGNSG  300
LLEDVIDESQ ALTRAEKPKE TCLNAEKSQG EFLWDYKLME DVGGNVGEES DLNAILDEPY  360
KDSTPTHSSI GVETTNASSQ KSNPVEDDLF NLLDDIPLPV TMPDWYDGNG NDIDGQCSNW  420
IEGDAGKENH QPEPSYSPVA TTPEITDNNW TDGASYWKNL PGIY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	2e-68	MYB family protein