PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027062567.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 186aa    MW: 20986.9 Da    PI: 9.0147
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027062567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.2e-181669457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                    + +++++q++ Le+ F +n+++  e++ +LA++lg++ rq+ +W+qN+Ra++k+
  XP_027062567.1 16 KKRLSQDQVRLLEANFSSNKKLEPERKLQLARQLGVPPRQIAIWYQNKRARWKN 69
                    56799***********************************************95 PP
2HD-ZIP_I/II106.42.2e-3416106393
     HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     k+rls++qv+lLE +F++++kLeperK +lar+Lg+ prq+a+W+qn+RAR+k++ lE dy aL+ ++++  +e+++Lekev +L+ el++
  XP_027062567.1  16 KKRLSQDQVRLLEANFSSNKKLEPERKLQLARQLGVPPRQIAIWYQNKRARWKNQSLELDYGALQLRLETALAEKRQLEKEVGQLQIELQK 106
                     99************************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MSSAQNLKAH SLKHCKKRLS QDQVRLLEAN FSSNKKLEPE RKLQLARQLG VPPRQIAIWY  60
QNKRARWKNQ SLELDYGALQ LRLETALAEK RQLEKEVGQL QIELQKTREN LLACTKQAQE  120
ILPFSSFSSC GDEAGGSSSL SLHEDVSCSW QDGRQGLQLE ELYACLMGSE GSARGSVGRN  180
EKIFLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.14e-36HD-ZIP family protein