PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027062649.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 240aa MW: 26900.2 Da PI: 7.5066

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027062649.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.1e-10	61	96	3	38
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-S CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKl 38 r+h+e+ErrRR+riN + Lr+l+P sk+ kK XP_027062649.1 61 RNHSEAERRRRERINGHLTSLRSLIPGTSKELRKKA 96 58************************9764444443 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MEFFNSFNGF PENYGYQGTV KNGSGSSSSL ILDNEKGELV RALLRPGQKG VNAEKALVAL 60 RNHSEAERRR RERINGHLTS LRSLIPGTSK ELRKKATEAT KGMLVPTDTD EVRVEEHQAD 120 AAGEPSYTIR AFLCCDYKHE LFSDLRQALE TLPLKTVSAE IATLGSRMVN VFEMTGCDQQ 180 NLENSEGREL LVNSVRQALR SVLDKFYASE EFLSRNALSN KRRRVSLFDA SSSSSLENFW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	72	ERRRRE
2	221	225	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	4e-24	bHLH family protein