PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027062683.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

M-type_MADS

Protein Properties

Length: 369aa MW: 41585.9 Da PI: 3.946

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027062683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.8	1.5e-14	10	61	2	50
---SHHHHHHHH...HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtf...skRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++ + n +v+f +R +gi KKA EL LCd+ v+v+i+ ++gk+++++ XP_027062683.1 10 KSKQSLNSKVSFkvcKNRVAGIKKKAMELALLCDIPVCVVIIEPSGKIQTWP 61 57889999999955449**********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MEKKALKSSK SKQSLNSKVS FKVCKNRVAG IKKKAMELAL LCDIPVCVVI IEPSGKIQTW 60 PENHNDVQSV IDKYSEKEQA RSLSAENREH PLEKSTDGEI DPVELVKILD SKIEAIKNKI 120 EERMVKDGAA AINVAEIDKM DNAVDLFDFD QYEVDNAAEY LDAIDFLDQE ETENPGKVLD 180 FVDLDPDQDE KTSTAEYLDA IDFLDHEETE NPGKVLDFVD LDPDQDEKTS TLIQSPHQEE 240 ISQKRRFLGS GFSDWEESST DFSDWDQLCT DWEKFSGDSG EGAEVSTDFE VRRQFPIDSD 300 FDMLPQLQNS DPIGSSYENP LRTGYEFPQI PLETDIEMDD PMAELLQFGD FLSGDAGNSD 360 FSIPLMAGF

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MEKKALKSSK SKQSLNSKVS FKVCKNRVAG IKKKAMELAL LCDIPVCVVI IEPSGKIQTW  60
PENHNDVQSV IDKYSEKEQA RSLSAENREH PLEKSTDGEI DPVELVKILD SKIEAIKNKI  120
EERMVKDGAA AINVAEIDKM DNAVDLFDFD QYEVDNAAEY LDAIDFLDQE ETENPGKVLD  180
FVDLDPDQDE KTSTAEYLDA IDFLDHEETE NPGKVLDFVD LDPDQDEKTS TLIQSPHQEE  240
ISQKRRFLGS GFSDWEESST DFSDWDQLCT DWEKFSGDSG EGAEVSTDFE VRRQFPIDSD  300
FDMLPQLQNS DPIGSSYENP LRTGYEFPQI PLETDIEMDD PMAELLQFGD FLSGDAGNSD  360
FSIPLMAGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02235.1	1e-10	M-type_MADS family protein