PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027062825.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17608.3 Da    PI: 9.8196
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027062825.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.92.6e-18347549
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     + n +vtfskRrng++ KA+EL++L++aeva+++fs+  + y +
  XP_027062825.1  3 KNNNLHVTFSKRRNGLFMKANELCTLTGAEVALLVFSPGKRAYSF 47
                    567889*******************************99888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MEKNNNLHVT FSKRRNGLFM KANELCTLTG AEVALLVFSP GKRAYSFGHS SFESVIDKFV  60
GNKPSPSVHG GTNQHVANHH GDNIDELNNK IIDLKTQLKA NKKREEVLGQ MIKEGQHKNW  120
WQAPIGEMNL EQLLMMKKAL EELKKKVQDE LKCQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-33M-type_MADS family protein